Turnover of mature miRNAs and siRNAs in plants and algae

Heriberto D Cerutti, Fadia Ibrahim

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Citations (Scopus)

Abstract

microRNAs (miRNAs) and small interfering RNAs (siRNAs) play important roles in gene regulation and defense responses against transposons and viruses in eukaryotes. These small RNAs generally trigger the silencing of cognate sequences through a variety of mechanisms, including RNA degradation, translational inhibition and transcriptional repression. In the past few years, the synthesis and the mode of action of miRNAs and siRNAs have attracted great attention. However, relatively little is known about mechanisms of quality control during small RNA biogenesis as well as those that regulate mature small RNA stability. Recent studies in Arabidopsis thaliana and Caenorhabditis elegans have implicated 3′-to-5′ (SDNs) and 5′-to-3′ (XRN-2) exoribonucleases in mature miRNA turnover and the modulation of small RNA levels and activity. In the green alga Chlamydomonas reinhardtii, a nucleotidyltransferase (MUT68) and an exosome subunit (RRP6) are involved in the 3′ untemplated uridylation and the degradation of miRNAs and siRNAs. The latter enzymes appear to function as a quality control mechanism to eliminate putative dysfunctional or damaged small RNA molecules. Several post-transcriptional modifications of miRNAs and siRNAs such as 3′ terminal methylation and untemplated nucleotide additions have also been reported to affect small RNA stability. These collective findings are beginning to uncover a new layer of regulatory control in the pathways involving small RNAs. We anticipate that understanding the mechanisms of mature miRNA and siRNA turnover will have direct implications for fundamental biology as well as for applications of RNA interference technology.

Original languageEnglish (US)
Title of host publicationRegulation of microRNAs
EditorsHelge Grosshans
Pages124-139
Number of pages16
DOIs
StatePublished - Dec 1 2010

Publication series

NameAdvances in Experimental Medicine and Biology
Volume700
ISSN (Print)0065-2598

Fingerprint

Algae
MicroRNAs
Small Interfering RNA
RNA
RNA Stability
Quality Control
Nucleotidyltransferases
Exoribonucleases
Exosomes
Chlamydomonas reinhardtii
Chlorophyta
Quality control
Caenorhabditis elegans
RNA Interference
Eukaryota
Arabidopsis
Methylation
Degradation
Nucleotides
Viruses

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Cerutti, H. D., & Ibrahim, F. (2010). Turnover of mature miRNAs and siRNAs in plants and algae. In H. Grosshans (Ed.), Regulation of microRNAs (pp. 124-139). (Advances in Experimental Medicine and Biology; Vol. 700). https://doi.org/10.1007/978-1-4419-7823-3_11

Turnover of mature miRNAs and siRNAs in plants and algae. / Cerutti, Heriberto D; Ibrahim, Fadia.

Regulation of microRNAs. ed. / Helge Grosshans. 2010. p. 124-139 (Advances in Experimental Medicine and Biology; Vol. 700).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cerutti, HD & Ibrahim, F 2010, Turnover of mature miRNAs and siRNAs in plants and algae. in H Grosshans (ed.), Regulation of microRNAs. Advances in Experimental Medicine and Biology, vol. 700, pp. 124-139. https://doi.org/10.1007/978-1-4419-7823-3_11
Cerutti HD, Ibrahim F. Turnover of mature miRNAs and siRNAs in plants and algae. In Grosshans H, editor, Regulation of microRNAs. 2010. p. 124-139. (Advances in Experimental Medicine and Biology). https://doi.org/10.1007/978-1-4419-7823-3_11
Cerutti, Heriberto D ; Ibrahim, Fadia. / Turnover of mature miRNAs and siRNAs in plants and algae. Regulation of microRNAs. editor / Helge Grosshans. 2010. pp. 124-139 (Advances in Experimental Medicine and Biology).
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