The GC-rich mitochondrial and plastid genomes of the green alga coccomyxa give insight into the evolution of organelle DNA nucleotide landscape

David Roy Smith, Fabien Burki, Takashi Yamada, Jane Grimwood, Igor V. Grigoriev, James L. van Etten, Patrick J. Keeling

Research output: Contribution to journalArticle

35 Citations (Scopus)

Abstract

Most of the available mitochondrial and plastid genome sequences are biased towards adenine and thymine (AT) over guanine and cytosine (GC). Examples of GC-rich organelle DNAs are limited to a small but eclectic list of species, including certain green algae. Here, to gain insight in the evolution of organelle nucleotide landscape, we present the GC-rich mitochondrial and plastid DNAs from the trebouxiophyte green alga Coccomyxa sp. C-169. We compare these sequences with other GC-rich organelle DNAs and argue that the forces biasing them towards G and C are nonadaptive and linked to the metabolic and/or life history features of this species. The Coccomyxa organelle genomes are also used for phylogenetic analyses, which highlight the complexities in trying to resolve the interrelationships among the core chlorophyte green algae, but ultimately favour a sister relationship between the Ulvophyceae and Chlorophyceae, with the Trebouxiophyceae branching at the base of the chlorophyte crown.

Original languageEnglish (US)
Article numbere23624
JournalPloS one
Volume6
Issue number8
DOIs
StatePublished - Aug 26 2011

Fingerprint

Coccomyxa
Plastid Genomes
Chlorophyta
Mitochondrial Genome
cytosine
Cytosine
guanine
Guanine
Algae
Organelles
organelles
Nucleotides
Genes
nucleotides
DNA
organelle genome
thymine
Plastids
Thymine
Chlorophyceae

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)
  • General

Cite this

The GC-rich mitochondrial and plastid genomes of the green alga coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. / Smith, David Roy; Burki, Fabien; Yamada, Takashi; Grimwood, Jane; Grigoriev, Igor V.; van Etten, James L.; Keeling, Patrick J.

In: PloS one, Vol. 6, No. 8, e23624, 26.08.2011.

Research output: Contribution to journalArticle

Smith, David Roy ; Burki, Fabien ; Yamada, Takashi ; Grimwood, Jane ; Grigoriev, Igor V. ; van Etten, James L. ; Keeling, Patrick J. / The GC-rich mitochondrial and plastid genomes of the green alga coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. In: PloS one. 2011 ; Vol. 6, No. 8.
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