The Enzymatic Activity of APOBE3G Multimers

Yangang Pan, Karen Zagorski, Luda S. Shlyakhtenko, Yuri L Lyubchenko

Research output: Contribution to journalArticle

Abstract

APOBEC3G (A3G) belongs to the family of cytosine deaminases that play an important role in the innate immune response. Similar to other, two-domain members of the APOBEC family, A3G is prone to concentration-dependent oligomerization, which is an integral for its function in the cell. It is shown that oligomerization of A3G is related to the packing mechanism into virus particle and, is critical for the so-called roadblock model during reverse transcription of proviral ssDNA. The role of oligomerization for deaminase activity of A3G is widely discussed in the literature; however, its relevance to deaminase activity for different oligomeric forms of A3G remains unclear. Here, using Atomic Force Microscopy, we directly visualized A3G-ssDNA complexes, determined their yield and stoichiometry and in parallel, using PCR assay, measured the deaminase activity of these complexes. Our data demonstrate a direct correlation between the total yield of A3G-ssDNA complexes and their total deaminase activity. Using these data, we calculated the relative deaminase activity for each individual oligomeric state of A3G in the complex. Our results show not only similar deaminase activity for monomer, dimer and tetramer of A3G in the complex, but indicate that larger oligomers of A3G retain their deaminase activity.

Original languageEnglish (US)
Article number17953
JournalScientific reports
Volume8
Issue number1
DOIs
StatePublished - Dec 1 2018

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Cytosine Deaminase
Atomic Force Microscopy
Innate Immunity
Virion
Reverse Transcription
Polymerase Chain Reaction
APOBEC-3G Deaminase

ASJC Scopus subject areas

  • General

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The Enzymatic Activity of APOBE3G Multimers. / Pan, Yangang; Zagorski, Karen; Shlyakhtenko, Luda S.; Lyubchenko, Yuri L.

In: Scientific reports, Vol. 8, No. 1, 17953, 01.12.2018.

Research output: Contribution to journalArticle

Pan, Yangang ; Zagorski, Karen ; Shlyakhtenko, Luda S. ; Lyubchenko, Yuri L. / The Enzymatic Activity of APOBE3G Multimers. In: Scientific reports. 2018 ; Vol. 8, No. 1.
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