Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus

Tommi A. White, Navasona Krishnan, Donald F Becker, John J. Tanner

Research output: Contribution to journalArticle

72 Citations (Scopus)

Abstract

Proline dehydrogenase (PRODH) and Δ1-pyrroline-5- carboxylate dehydrogenase (P5CDH) catalyze the two-step oxidation of proline to glutamate. They are distinct monofunctional enzymes in all eukaryotes and some bacteria but are fused into bifunctional enzymes known as proline utilization A (PutA) in other bacteria. Here we report the first structure and biochemical data for a monofunctional PRODH. The 2.0-Å resolution structure of Thermus thermophilus PRODH reveals a distorted (βα)8 barrel catalytic core domain and a hydrophobic α-helical domain located above the carboxyl-terminal ends of the strands of the barrel. Although the catalytic core is similar to that of the PutA PRODH domain, the FAD conformation of T. thermophilus PRODH is remarkably different and likely reflects unique requirements for membrane association and communication with P5CDH. Also, the FAD of T. thermophilus PRODH is highly solvent-exposed compared with PutA due to a 4-Å shift of helix 8. Structure-based sequence analysis of the PutA/PRODH family led us to identify nine conserved motifs involved in cofactor and substrate recognition. Biochemical studies show that the midpoint potential of the FAD is -75 mV and the kinetic parameters for proline are Km = 27 mM and kcat = 13 s-1. 3,4-Dehydro-L-proline was found to be an efficient substrate, and L-tetrahydro-2-furoic acid is a competitive inhibitor (KI = 1.0 mM). Finally, we demonstrate that T. thermophilus PRODH reacts with O2 producing superoxide. This is significant because superoxide production underlies the role of human PRODH in p53-mediated apoptosis, implying commonalities between eukaryotic and bacterial monofunctional PRODHs.

Original languageEnglish (US)
Pages (from-to)14316-14327
Number of pages12
JournalJournal of Biological Chemistry
Volume282
Issue number19
DOIs
StatePublished - May 11 2007

Fingerprint

Proline Oxidase
Thermus thermophilus
Proline
Kinetics
1-Pyrroline-5-Carboxylate Dehydrogenase
Flavin-Adenine Dinucleotide
Catalytic Domain
Superoxides
Bacteria
Substrates
Enzymes
Eukaryota
Kinetic parameters
Sequence Analysis
Conformations
Glutamic Acid
Communication
Association reactions

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Cell Biology

Cite this

Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus. / White, Tommi A.; Krishnan, Navasona; Becker, Donald F; Tanner, John J.

In: Journal of Biological Chemistry, Vol. 282, No. 19, 11.05.2007, p. 14316-14327.

Research output: Contribution to journalArticle

White, Tommi A. ; Krishnan, Navasona ; Becker, Donald F ; Tanner, John J. / Structure and kinetics of monofunctional proline dehydrogenase from Thermus thermophilus. In: Journal of Biological Chemistry. 2007 ; Vol. 282, No. 19. pp. 14316-14327.
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