Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin

Amit Kumar, Chandrasekhar Natarajan, Hideaki Moriyama, Christopher C. Witt, Roy E. Weber, Angela Fago, Jay F Storz

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

If the fitness effects of amino acid mutations are conditional on genetic background, then mutations can have different effects depending on the sequential order in which they occur during evolutionary transitions in protein function. A key question concerns the fraction of possible mutational pathways connecting alternative functional states that involve transient reductions in fitness. Here we examine the functional effects of multiple amino acid substitutions that contributed to an evolutionary transition in the oxygenation properties of avian hemoglobin (Hb). The set of causative changes included mutations at intradimer interfaces of the Hb tetramer. Replacements at such sites may be especially likely to have epistatic effects on Hb function since residues at intersubunit interfaces are enmeshed in networks of salt bridges and hydrogen bonds between like and unlike subunits; mutational reconfigurations of these atomic contacts can affect allosteric transitions in quaternary structure and the propensity for tetramer-dimer dissociation. We used ancestral protein resurrection in conjunction with a combinatorial protein engineering approach to synthesize genotypes representing the complete set of mutational intermediates in all possible forward pathways that connect functionally distinct ancestral and descendent genotypes. The experiments revealed that 1/2 of all possible forward pathways included mutational intermediates with aberrant functional properties because particular combinations of mutations promoted tetramer-dimer dissociation. The subset of mutational pathways with unstable intermediates may be selectively inaccessible, representing evolutionary roads not taken. The experimental results also demonstrate how epistasis for particular functional properties of proteinsmay bemediated indirectly by mutational effects on quaternary structural stability.

Original languageEnglish (US)
Pages (from-to)1240-1251
Number of pages12
JournalMolecular biology and evolution
Volume34
Issue number5
DOIs
StatePublished - May 1 2017

Fingerprint

epistasis
hemoglobin
Hemoglobins
mutation
Mutation
functional properties
Genotype
protein
protein engineering
Protein Engineering
genotype
fitness
amino acid
amino acid substitution
Amino Acid Substitution
genetic background
hydrogen
oxygenation
roads
Hydrogen

Keywords

  • Caprimulgidae
  • Epistasis
  • Fitness landscape
  • Hemoglobin
  • Nightjars
  • Pleiotropy

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Molecular Biology
  • Genetics

Cite this

Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin. / Kumar, Amit; Natarajan, Chandrasekhar; Moriyama, Hideaki; Witt, Christopher C.; Weber, Roy E.; Fago, Angela; Storz, Jay F.

In: Molecular biology and evolution, Vol. 34, No. 5, 01.05.2017, p. 1240-1251.

Research output: Contribution to journalArticle

Kumar, Amit ; Natarajan, Chandrasekhar ; Moriyama, Hideaki ; Witt, Christopher C. ; Weber, Roy E. ; Fago, Angela ; Storz, Jay F. / Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin. In: Molecular biology and evolution. 2017 ; Vol. 34, No. 5. pp. 1240-1251.
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