Abstract

Chronic obstructive pulmonary disease (COPD) is an inflammatory disorder characterized by incompletely reversible airflow obstruction. The complexity of the lung microbial community in COPD patients has been highlighted in recent years. Evidence suggests that transplantation, medications, age, and disease severity influence microbial community membership. However, the dynamics of the lung microbiome in stable COPD patients remain poorly understood. In this study, we completed a longitudinal 16S ribosomal RNA survey of the lung microbiome on replicate sputum samples collected from 4 former smokers with COPD (Stage 2) within a 2-day time period. Samples from each individual over the two-day period were similar based on α-diversity, principle component analysis and taxonomy at the phyla and genera level. Sputum samples from COPD patients were also collected between 2–9 months of follow-up. Data suggest an increased variability of the sputum microbiota when comparing samples collected 3 months compared to those collected 4 months; however, no statistically significant shifts in the abundance (>2-fold) of taxa between the two time points was observed. Bacterial composition and the number of operational taxonomic units (OTUs) remained similar over time. Results from this study suggest that the sputum microbiome is relatively stable in clinically stable COPD patients (Stage 2). This study furthers our understanding of the dynamics of the lung microbiome in COPD patients.

Original languageEnglish (US)
Article numbere0191499
JournalPloS one
Volume13
Issue number3
DOIs
StatePublished - Mar 2018

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Pulmonary diseases
Microbiota
Sputum
respiratory tract diseases
Chronic Obstructive Pulmonary Disease
lungs
Lung
microbial communities
16S Ribosomal RNA
sampling
Taxonomies
microbiome
air flow
disease severity
drug therapy
principal component analysis
Transplantation
ribosomal RNA
taxonomy
Chemical analysis

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Short term dynamics of the sputum microbiome among COPD patients. / Sinha, Rohita; Weissenburger-Moser, Lisa A.; Clarke, Jennifer L; Smith, Lynette M; Heires, Art J.; Romberger, Debra; LeVan, Tricia D.

In: PloS one, Vol. 13, No. 3, e0191499, 03.2018.

Research output: Contribution to journalArticle

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