Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors

Etsuko N. Moriyama, Pooja K. Strope, Stephen O. Opiyo, Zhongying Chen, Alan M. Jones

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57 Scopus citations

Abstract

To identify divergent seven-transmembrane receptor (7TMR) candidates from the Arabidopsis thaliana genome, multiple protein classification methods were combined, including both alignment-based and alignment-free classifiers. This resolved problems in optimally training individual classifiers using limited and divergent samples, and increased stringency for candidate proteins. We identified 394 proteins as 7TMR candidates and highlighted 54 with corresponding expression patterns for further investigation.

Original languageEnglish (US)
Article numberR96
JournalGenome biology
Volume7
Issue number10
DOIs
Publication statusPublished - Oct 25 2006

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ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

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