Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism

Ligia A. Papale, Qi Zhang, Sisi Li, Kailei Chen, Sündüz Keleş, Reid S. Alisch

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

The autism spectrum disorders (ASD) comprise a broad group of behaviorally related neurodevelopmental disorders affecting as many as 1 in 68 children. The hallmarks of ASD consist of impaired social and communication interactions, pronounced repetitive behaviors and restricted patterns of interests. Family, twin and epidemiological studies suggest a polygenetic and epistatic susceptibility model involving the interaction of many genes; however, the etiology of ASD is likely to be complex and include both epigenetic and environmental factors. 5-hydroxymethylcytosine (5hmC) is a novel environmentally sensitive DNA modification that is highly enriched in post-mitotic neurons and is associated with active transcription of neuronal genes. Here, we used an established chemical labeling and affinity purification method coupled with high-throughput sequencing technology to generate a genome-wide profile of striatal 5hmC in an autism mouse model (Cntnap2-/- mice) and found that at 9 weeks of age the Cntnap2-/- mice have a genome-wide disruption in 5hmC, primarily in genic regions and repetitive elements. Annotation of differentially hydroxymethylated regions (DhMRs) to genes revealed a significant overlap with known ASD genes (e.g. Nrxn1 and Reln) that carried an enrichment of neuronal ontological functions, including axonogenesis and neuron projection morphogenesis. Finally, sequence motif predictions identified associations with transcription factors that have a high correlation with important genes in neuronal developmental and functional pathways. Together, our data implicate a role for5hmC-mediated epigenetic modulation in the pathogenesis of autismand represent a critical step toward understanding the genome-wide molecular consequence of the Cntnap2 mutation, which results in an autism-like phenotype.

Original languageEnglish (US)
Pages (from-to)7121-7131
Number of pages11
JournalHuman Molecular Genetics
Volume24
Issue number24
DOIs
StatePublished - 2015
Externally publishedYes

Fingerprint

Autistic Disorder
Genome
Genes
Epigenomics
Neurons
Corpus Striatum
Twin Studies
Nucleic Acid Repetitive Sequences
Interpersonal Relations
Morphogenesis
Epidemiologic Studies
Transcription Factors
Communication
5-hydroxymethylcytosine
Technology
Phenotype
Mutation
Autism Spectrum Disorder
DNA

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics
  • Genetics(clinical)

Cite this

Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. / Papale, Ligia A.; Zhang, Qi; Li, Sisi; Chen, Kailei; Keleş, Sündüz; Alisch, Reid S.

In: Human Molecular Genetics, Vol. 24, No. 24, 2015, p. 7121-7131.

Research output: Contribution to journalArticle

Papale, Ligia A. ; Zhang, Qi ; Li, Sisi ; Chen, Kailei ; Keleş, Sündüz ; Alisch, Reid S. / Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism. In: Human Molecular Genetics. 2015 ; Vol. 24, No. 24. pp. 7121-7131.
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