Genetic diversity and population structure of Clavibacter michiganensis subsp. nebraskensis

I. V. Agarkova, P. A. Lambrecht, A. K. Vidaver

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

Clavibacter michiganensis subsp. nebraskensis (CMN) is a gram-positive bacterium and an incitant of Goss's bacterial wilt and leaf blight or "leaf freckles" in corn. A population structure of a wide temporal and geographic collection of CMN strains (n = 131), originating between 1969 and 2009, was determined using amplified fragment length polymorphism (AFLP) analysis and repetitive DNA sequence-based BOX-PCR. Analysis of the composite data set of AFLP and BOX-PCR fingerprints revealed two groups with a 60% cutoff similarity: a major group A (n = 118 strains) and a minor group B (n = 13 strains). The clustering in both groups was not correlated with strain pathogenicity. Group A contained two clusters, A1 (n = 78) and A2 (n = 40), with a linkage of 75%. Group A strains did not show any correlation with historical, geographical, morphological, or physiological properties of the strains. Group B was very heterogeneous and eight out of nine clusters were represented by a single strain. The mean similarity between clusters in group B varied from 13% to 63%. All strains in group B were isolated after 1999. The percentage of group B strains among all strains isolated after 1999 (n = 69) was 18.8%. Implications of the findings are discussed.

Original languageEnglish (US)
Pages (from-to)366-374
Number of pages9
JournalCanadian journal of microbiology
Volume57
Issue number5
DOIs
StatePublished - Apr 21 2011

Fingerprint

Amplified Fragment Length Polymorphism Analysis
Melanosis
Polymerase Chain Reaction
Nucleic Acid Repetitive Sequences
Dermatoglyphics
Gram-Positive Bacteria
varespladib methyl
Population
Zea mays
Cluster Analysis
Virulence
Datasets

Keywords

  • AFLP
  • BOX-PCR
  • Corn
  • DNA fingerprinting
  • Goss's wilt
  • Rep-PCR

ASJC Scopus subject areas

  • Microbiology
  • Immunology
  • Applied Microbiology and Biotechnology
  • Molecular Biology
  • Genetics

Cite this

Genetic diversity and population structure of Clavibacter michiganensis subsp. nebraskensis. / Agarkova, I. V.; Lambrecht, P. A.; Vidaver, A. K.

In: Canadian journal of microbiology, Vol. 57, No. 5, 21.04.2011, p. 366-374.

Research output: Contribution to journalArticle

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