Gene-expression signatures can distinguish gastric cancer grades and stages

Juan Cui, Fan Li, Guoqing Wang, Xuedong Fang, J. David Puett, Ying Xu

Research output: Contribution to journalArticle

48 Citations (Scopus)

Abstract

Microarray gene-expression data of 54 paired gastric cancer and adjacent noncancerous gastric tissues were analyzed, with the aim to establish gene signatures for cancer grades (well-, moderately-, poorly- or un-differentiated) and stages (I, II, III and IV), which have been determined by pathologists. Our statistical analysis led to the identification of a number of gene combinations whose expression patterns serve well as signatures of different grades and different stages of gastric cancer. A 19-gene signature was found to have discerning power between high- and low-grade gastric cancers in general, with overall classification accuracy at 79.6%. An expanded 198-gene panel allows the stratification of cancers into four grades and control, giving rise to an overall classification agreement of 74.2% between each grade designated by the pathologists and our prediction. Two signatures for cancer staging, consisting of 10 genes and 9 genes, respectively, provide high classification accuracies at 90.0% and 84.0%, among early-, advanced-stage cancer and control. Functional and pathway analyses on these signature genes reveal the significant relevance of the derived signatures to cancer grades and progression. To the best of our knowledge, this represents the first study on identification of genes whose expression patterns can serve as markers for cancer grades and stages.

Original languageEnglish (US)
Article numbere17819
JournalPloS one
Volume6
Issue number3
DOIs
StatePublished - Mar 24 2011

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stomach neoplasms
Transcriptome
Gene expression
Stomach Neoplasms
Genes
gene expression
neoplasms
genes
Neoplasms
Gene Expression
Neoplasm Staging
Neoplasm Genes
Microarrays
Stomach
Statistical methods
stomach
statistical analysis
Tissue
prediction

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Gene-expression signatures can distinguish gastric cancer grades and stages. / Cui, Juan; Li, Fan; Wang, Guoqing; Fang, Xuedong; Puett, J. David; Xu, Ying.

In: PloS one, Vol. 6, No. 3, e17819, 24.03.2011.

Research output: Contribution to journalArticle

Cui, Juan ; Li, Fan ; Wang, Guoqing ; Fang, Xuedong ; Puett, J. David ; Xu, Ying. / Gene-expression signatures can distinguish gastric cancer grades and stages. In: PloS one. 2011 ; Vol. 6, No. 3.
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