FPGA-accelerated simulation engine for non-viral gene delivery

David Perlaza, Adam Postula, Lech Jozwiak, Tadeusz A Wysocki

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Computational methods have become an important part of gene delivery research, as they allow researchers to experiment with different models of cellular processes. Models of the gene delivery process based on telecommunication theory make this experimentation especially efficient. Therefore, this paper presents a specialised FPGA-accelerated heterogeneous architecture for simulating the gene delivery process using queuing theory. We also present an implementation of a programmable M/M/∞ queue simulator, and compare its performance to that of an equivalent software simulator. We finally discuss limitations of our system and outline future work aimed at further performance improvement.

Original languageEnglish (US)
Title of host publication2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings
EditorsBeata J. Wysocki, Tadeusz A. Wysocki
PublisherInstitute of Electrical and Electronics Engineers Inc.
ISBN (Electronic)9781467381185
DOIs
StatePublished - Jan 1 2015
Event9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Cairns, Australia
Duration: Dec 14 2015Dec 16 2015

Publication series

Name2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings

Other

Other9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015
CountryAustralia
CityCairns
Period12/14/1512/16/15

Fingerprint

Field programmable gate arrays (FPGA)
Genes
Engines
Simulators
Computational methods
Telecommunication
Experiments

ASJC Scopus subject areas

  • Computer Networks and Communications
  • Signal Processing

Cite this

Perlaza, D., Postula, A., Jozwiak, L., & Wysocki, T. A. (2015). FPGA-accelerated simulation engine for non-viral gene delivery. In B. J. Wysocki, & T. A. Wysocki (Eds.), 2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings [7391790] (2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ICSPCS.2015.7391790

FPGA-accelerated simulation engine for non-viral gene delivery. / Perlaza, David; Postula, Adam; Jozwiak, Lech; Wysocki, Tadeusz A.

2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings. ed. / Beata J. Wysocki; Tadeusz A. Wysocki. Institute of Electrical and Electronics Engineers Inc., 2015. 7391790 (2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Perlaza, D, Postula, A, Jozwiak, L & Wysocki, TA 2015, FPGA-accelerated simulation engine for non-viral gene delivery. in BJ Wysocki & TA Wysocki (eds), 2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings., 7391790, 2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings, Institute of Electrical and Electronics Engineers Inc., 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015, Cairns, Australia, 12/14/15. https://doi.org/10.1109/ICSPCS.2015.7391790
Perlaza D, Postula A, Jozwiak L, Wysocki TA. FPGA-accelerated simulation engine for non-viral gene delivery. In Wysocki BJ, Wysocki TA, editors, 2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc. 2015. 7391790. (2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings). https://doi.org/10.1109/ICSPCS.2015.7391790
Perlaza, David ; Postula, Adam ; Jozwiak, Lech ; Wysocki, Tadeusz A. / FPGA-accelerated simulation engine for non-viral gene delivery. 2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings. editor / Beata J. Wysocki ; Tadeusz A. Wysocki. Institute of Electrical and Electronics Engineers Inc., 2015. (2015, 9th International Conference on Signal Processing and Communication Systems, ICSPCS 2015 - Proceedings).
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