FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids

Tao Feng, Ya Yang, Lucas Busta, Edgar B. Cahoon, Hengchang Wang, Shiyou Lü

Research output: Contribution to journalArticle

Abstract

Polyacetylenes (PAs) are bioactive, specialized plant defense compounds produced by some species in the eudicot clade campanulids. Early steps of PA biosynthesis are catalyzed by Fatty Acid Desaturase 2 (FAD2). Canonical FAD2s catalyze desaturation, but divergent forms can catalyze hydroxylation, conjugation, acetylenation, and epoxygenation. These alternate reactions give rise to valuable unusual fatty acids, including the precursors to PAs. The extreme functional diversity of FAD2 enzymes and the origin of PA biosynthesis are poorly understood from an evolutionary perspective. We focus here on the evolution of the FAD2 gene family. We uncovered a core eudicot-wide gene duplication event giving rise to two lineages: FAD2-α and FAD2-β. Independent neofunctionalizations in both lineages have resulted in functionally diverse FAD2-LIKEs involved in unusual fatty acid biosynthesis. We found significantly accelerated rates of molecular evolution in FAD2-LIKEs and use this metric to provide a list of uncharacterized candidates for further exploration of FAD2 functional diversity. FAD2-α has expanded extensively in Asterales and Apiales, two main clades of campanulids, by ancient gene duplications. Here, we detected positive selection in both Asterales and Apiales lineages, which may have enabled the evolution of PA metabolism in campanulids. Together, these findings also imply that yet uncharacterized FAD2-α copies are involved in later steps of PA biosynthesis. This work establishes a robust phylogenetic framework in which to interpret functional data and to direct future research into the origin and evolution of PA metabolism.

Original languageEnglish (US)
Pages (from-to)714-728
Number of pages15
JournalPlant physiology
Volume181
Issue number2
DOIs
StatePublished - Oct 1 2019

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Polyacetylenes
Fatty Acid Desaturases
polyacetylenes
stearoyl-CoA desaturase
Radiation
metabolism
Genes
genes
Apiales
Asterales
biosynthesis
Gene Duplication
functional diversity
gene duplication
Fatty Acids
fatty acids
Molecular Evolution
hydroxylation
Hydroxylation

ASJC Scopus subject areas

  • Physiology
  • Genetics
  • Plant Science

Cite this

FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids. / Feng, Tao; Yang, Ya; Busta, Lucas; Cahoon, Edgar B.; Wang, Hengchang; Lü, Shiyou.

In: Plant physiology, Vol. 181, No. 2, 01.10.2019, p. 714-728.

Research output: Contribution to journalArticle

Feng, Tao ; Yang, Ya ; Busta, Lucas ; Cahoon, Edgar B. ; Wang, Hengchang ; Lü, Shiyou. / FAD2 Gene Radiation and Positive Selection Contributed to Polyacetylene Metabolism Evolution in Campanulids. In: Plant physiology. 2019 ; Vol. 181, No. 2. pp. 714-728.
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