Ethidium monoazide does not inhibit RT-PCR amplification of nonviable avian influenza RNA

David A. Graiver, Samuel E. Saunders, Christina L. Topliff, Clayton L Kelling, Shannon L Bartelt-Hunt

Research output: Contribution to journalArticle

23 Citations (Scopus)

Abstract

A critical obstacle to using PCR to quantify viral titers is the distinguishment of viable and nonviable genomic material. Pretreatments of ethidium monoazide (EMA) have been effective in preventing PCR amplification of DNA from nonviable bacteria. To test whether an EMA pretreatment could be used with RT-PCR to quantify viable RNA virions, avian influenza virus (AIV) survival was measured in water through 28 d using cell culture titration and real-time RT-PCR with or without EMA pretreatment. Cell culture titration yielded significantly lower titers than both RT-PCR procedures, and there was no significant difference between RT-PCR results with or without EMA. Ineffective binding of EMA to AIV RNA may have allowed nonviable AIV RNA to amplify. Furthermore, since AIV inactivation may take place by means other than membrane disruption, any pretreatment distinguishing viable and nonviable AIV virions by membrane integrity may not be practical.

Original languageEnglish (US)
Pages (from-to)51-54
Number of pages4
JournalJournal of Virological Methods
Volume164
Issue number1-2
DOIs
StatePublished - Mar 1 2010

Fingerprint

Influenza in Birds
Orthomyxoviridae
RNA
Polymerase Chain Reaction
Virion
Cell Culture Techniques
Virus Inactivation
Membranes
Real-Time Polymerase Chain Reaction
8-azidoethidium
Bacteria
Water
DNA

Keywords

  • Avian influenza
  • Cell culture titration
  • Ethidium monoazide
  • RT-PCR

ASJC Scopus subject areas

  • Virology

Cite this

Ethidium monoazide does not inhibit RT-PCR amplification of nonviable avian influenza RNA. / Graiver, David A.; Saunders, Samuel E.; Topliff, Christina L.; Kelling, Clayton L; Bartelt-Hunt, Shannon L.

In: Journal of Virological Methods, Vol. 164, No. 1-2, 01.03.2010, p. 51-54.

Research output: Contribution to journalArticle

Graiver, David A. ; Saunders, Samuel E. ; Topliff, Christina L. ; Kelling, Clayton L ; Bartelt-Hunt, Shannon L. / Ethidium monoazide does not inhibit RT-PCR amplification of nonviable avian influenza RNA. In: Journal of Virological Methods. 2010 ; Vol. 164, No. 1-2. pp. 51-54.
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