Epigenetic and genetic mechanisms in red cell biology

Kyle J. Hewitt, Rajendran Sanalkumar, Kirby D. Johnson, Sunduz Keles, Emery H. Bresnick

Research output: Contribution to journalReview article

4 Citations (Scopus)

Abstract

PURPOSE OF REVIEW: Erythropoiesis, in which hematopoietic stem cells (HSCs) generate lineage-committed progenitors that mature into erythrocytes, is regulated by numerous chromatin modifying and remodeling proteins. We will focus on how epigenetic and genetic mechanisms mesh to establish the erythroid transcriptome and how studying erythropoiesis can yield genomic principles. RECENT FINDINGS: Trans-acting factor binding to small DNA motifs (cis-elements) underlies regulatory complex assembly at specific chromatin sites, and therefore unique transcriptomes. As cis-elements are often very small, thousands or millions of copies of a given element reside in a genome. Chromatin restricts factor access in a context-dependent manner, and cis-element-binding factors recruit chromatin regulators that mediate functional outputs. Technologies to map chromatin attributes of loci in vivo, to edit genomes and to sequence whole egnomes have been transformative in discovering critical cis-elements linked to human disease. SUMMARY: Cis-elements mediate chromatin-targeting specificity, and chromatin regulators dictate cis-element accessibility/function, illustrating an amalgamation of genetic and epigenetic mechanisms. Cis-elements often function ectopically when studied outside of their endogenous loci, and complex strategies to identify nonredundant cis-elements require further development. Facile genome-editing technologies provide a new approach to address this problem. Extending genetic analyses beyond exons and promoters will yield a rich pipeline of cis-element alterations with importance for red cell biology and disease.

Original languageEnglish (US)
Pages (from-to)155-164
Number of pages10
JournalCurrent Opinion in Hematology
Volume21
Issue number3
DOIs
StatePublished - May 2014

Fingerprint

Epigenomics
Chromatin
Cell Biology
Erythropoiesis
Transcriptome
Genome
Technology
Nucleotide Motifs
Chromatin Assembly and Disassembly
Trans-Activators
Cell Lineage
Hematopoietic Stem Cells
Exons
Erythrocytes
Proteins

Keywords

  • chromatin
  • cis-element
  • epigenetics
  • erythropoiesis

ASJC Scopus subject areas

  • Hematology

Cite this

Epigenetic and genetic mechanisms in red cell biology. / Hewitt, Kyle J.; Sanalkumar, Rajendran; Johnson, Kirby D.; Keles, Sunduz; Bresnick, Emery H.

In: Current Opinion in Hematology, Vol. 21, No. 3, 05.2014, p. 155-164.

Research output: Contribution to journalReview article

Hewitt, KJ, Sanalkumar, R, Johnson, KD, Keles, S & Bresnick, EH 2014, 'Epigenetic and genetic mechanisms in red cell biology', Current Opinion in Hematology, vol. 21, no. 3, pp. 155-164. https://doi.org/10.1097/MOH.0000000000000034
Hewitt, Kyle J. ; Sanalkumar, Rajendran ; Johnson, Kirby D. ; Keles, Sunduz ; Bresnick, Emery H. / Epigenetic and genetic mechanisms in red cell biology. In: Current Opinion in Hematology. 2014 ; Vol. 21, No. 3. pp. 155-164.
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