Energetic and hydration contributions of the removal of methyl groups from thymine to form uracil in G-quadruplexes

Chris M. Olsen, Luis A Marky

Research output: Contribution to journalArticle

24 Citations (Scopus)

Abstract

A combination of spectroscopic and calorimetric techniques is used to investigate the unfolding of two G-quadruplexes: d(G2U 2G2UGUG2U2G2), G2-U, and d(G2T2G2TGTG2T2G 2), G2. The comparisons of their thermodynamic data allow us to elucidate the role of methylation on the energetic and hydration properties accompanying their stable formation. The favorable formation of each G-quadruplex results from the characteristic enthalpy-entropy compensation, uptake of ions, and release of water molecules. The loops of G2-U and G2 contribute favorably to their formation, and the absence of methyl groups stabilizes the G-quadruplex. The unfolding of G2-U produces a larger ΔV, indicating a difference in the hydration states of the two oligonucleotides, while the opposite signs between ΔΔG° with the ΔΔV suggest that the differential hydration reflects structural, or hydrophobic, water is involved in the unfolding of G-quadruplexes.

Original languageEnglish (US)
Pages (from-to)9-11
Number of pages3
JournalJournal of Physical Chemistry B
Volume113
Issue number1
DOIs
StatePublished - Jan 8 2009

Fingerprint

uracil
Thymine
Uracil
thymine
Hydration
hydration
methylation
Methylation
Water
oligonucleotides
Oligonucleotides
water
Enthalpy
Entropy
enthalpy
Thermodynamics
Ions
entropy
thermodynamics
Molecules

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Surfaces, Coatings and Films
  • Materials Chemistry

Cite this

Energetic and hydration contributions of the removal of methyl groups from thymine to form uracil in G-quadruplexes. / Olsen, Chris M.; Marky, Luis A.

In: Journal of Physical Chemistry B, Vol. 113, No. 1, 08.01.2009, p. 9-11.

Research output: Contribution to journalArticle

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