Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes

Wang Chenghui, Jun Wang, Jinquan Yang, Guoqing Lu, Xiao Song, Qin Chen, Jiawei Xu, Qinling Yang, Sifa Li

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

The black carp Mylopharyngodon piceus (Cyprinidae), native to eastern Asian, is a large, commercially important fish, and has been introduced to many other countries for variable reasons. In this study, the complete mitochondrial genome sequences from three specimens of black carp were first determined and were used to evaluate the sister relationship between black carp and grass carp (Ctenopharyngodon idellus). Two individuals had a mitogenome of 16,609 bp, while the other was 16,611 bp in length. Similar to most vertebrates, the black carp contains the same gene order and an identical number of genes or regions, including 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and 1 putative control region. Phylogenetic analyses using three different computational algorithms (Maximum Parsimony, Maximum Likelihood, and Bayesian analysis) revealed two distinct clades in subfamily Leuciscinae. However, the sister taxonomic relationship of black carp and grass carp was not observed using sequences of nearly complete mitochondrial genomes, which suggests more nuclear gene markers are needed to resolve the phylogenetic relationship between black carp and grass carp.

Original languageEnglish (US)
Pages (from-to)6337-6342
Number of pages6
JournalMolecular Biology Reports
Volume39
Issue number5
DOIs
StatePublished - May 1 2012

Fingerprint

Carps
Phylogeny
Fishes
Mitochondrial Genome
Genes
Cyprinidae
Gene Order
Bayes Theorem
Transfer RNA
rRNA Genes
Vertebrates

Keywords

  • Leuciscinae
  • Mitochondrial genome
  • Mylopharyngodon piceus
  • Phylogeny

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Cite this

Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes. / Chenghui, Wang; Wang, Jun; Yang, Jinquan; Lu, Guoqing; Song, Xiao; Chen, Qin; Xu, Jiawei; Yang, Qinling; Li, Sifa.

In: Molecular Biology Reports, Vol. 39, No. 5, 01.05.2012, p. 6337-6342.

Research output: Contribution to journalArticle

Chenghui, Wang ; Wang, Jun ; Yang, Jinquan ; Lu, Guoqing ; Song, Xiao ; Chen, Qin ; Xu, Jiawei ; Yang, Qinling ; Li, Sifa. / Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes. In: Molecular Biology Reports. 2012 ; Vol. 39, No. 5. pp. 6337-6342.
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