A highly conserved family of inactivated archaeal B family DNA polymerases

Igor B. Rogozin, Kira S. Makarova, Youri I Pavlov, Eugene V. Koonin

Research output: Contribution to journalArticle

27 Citations (Scopus)

Abstract

A widespread and highly conserved family of apparently inactivated derivatives of archaeal B-family DNA polymerases is described. Phylogenetic analysis shows that the inactivated forms comprise a distinct clade among archaeal B-family polymerases and that, within this clade, Euryarchaea and Crenarchaea are clearly separated from each other and from a small group of bacterial homologs. These findings are compatible with an ancient duplication of the DNA polymerase gene followed by inactivation and parallel loss in some of the lineages although contribution of horizontal gene transfer cannot be ruled out. The inactivated derivative of the archaeal DNA polymerase could form a complex with the active paralog and play a structural role in DNA replication.

Original languageEnglish (US)
Article number32
JournalBiology direct
Volume3
DOIs
StatePublished - Aug 6 2008

Fingerprint

DNA-directed DNA polymerase
DNA-Directed DNA Polymerase
DNA
Archaeal DNA
Gene
Derivatives
Gene transfer
Phylogenetic Analysis
Derivative
Horizontal Gene Transfer
DNA Replication
Gene Silencing
DNA replication
Duplication
gene transfer
inactivation
Horizontal
Genes
Distinct
phylogeny

ASJC Scopus subject areas

  • Immunology
  • Ecology, Evolution, Behavior and Systematics
  • Modeling and Simulation
  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)
  • Applied Mathematics

Cite this

A highly conserved family of inactivated archaeal B family DNA polymerases. / Rogozin, Igor B.; Makarova, Kira S.; Pavlov, Youri I; Koonin, Eugene V.

In: Biology direct, Vol. 3, 32, 06.08.2008.

Research output: Contribution to journalArticle

Rogozin, Igor B. ; Makarova, Kira S. ; Pavlov, Youri I ; Koonin, Eugene V. / A highly conserved family of inactivated archaeal B family DNA polymerases. In: Biology direct. 2008 ; Vol. 3.
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