A comparison of computational approaches in the molecular identification of pathogenic organisms

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Molecular based identification of pathogenic organism is becoming a routine procedure in many diagnostic laboratories. Ribosomal RNA is particularly the most popular choice for this purpose. Although, other targets such as 'cytochrome b', 'rpoB' and 'actin' are highly effective, they have not been extensively used. This could be due to the lack of effective data collection method. We used sequence based exhaustive search of public sequence database to obtain all target sequences. This approach is currently being extended to collect such molecular targets for Nocardia and other slow growing medically important organism.

Original languageEnglish (US)
Title of host publicationProceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012
Number of pages1
DOIs
StatePublished - Dec 1 2012
Event2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012 - San Diego, CA, United States
Duration: Sep 27 2012Sep 28 2012

Publication series

NameProceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

Conference

Conference2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012
CountryUnited States
CitySan Diego, CA
Period9/27/129/28/12

Fingerprint

Nocardia
Cytochromes b
Ribosomal RNA
Actins
Databases
Proteins

ASJC Scopus subject areas

  • Biomedical Engineering
  • Health Informatics
  • Health Information Management

Cite this

Bastola, D. R., McGrath, S., Bhowmick, S., & Thapa, I. (2012). A comparison of computational approaches in the molecular identification of pathogenic organisms. In Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012 [6366198] (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012). https://doi.org/10.1109/HISB.2012.23

A comparison of computational approaches in the molecular identification of pathogenic organisms. / Bastola, Dhundy Raj; McGrath, Scott; Bhowmick, Sanjukta; Thapa, Ishwor.

Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. 6366198 (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bastola, DR, McGrath, S, Bhowmick, S & Thapa, I 2012, A comparison of computational approaches in the molecular identification of pathogenic organisms. in Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012., 6366198, Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, San Diego, CA, United States, 9/27/12. https://doi.org/10.1109/HISB.2012.23
Bastola DR, McGrath S, Bhowmick S, Thapa I. A comparison of computational approaches in the molecular identification of pathogenic organisms. In Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. 6366198. (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012). https://doi.org/10.1109/HISB.2012.23
Bastola, Dhundy Raj ; McGrath, Scott ; Bhowmick, Sanjukta ; Thapa, Ishwor. / A comparison of computational approaches in the molecular identification of pathogenic organisms. Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012. 2012. (Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012).
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