Guoqing Lu, PhD

Professor

  • 2817 Citations
  • 24 h-Index
19972019
If you made any changes in Pure, your changes will be visible here soon.

Research Output 1997 2019

2019
1 Citation (Scopus)

Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)

Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.

Research output: Contribution to journalArticle

Open Access
Urodela
Gastrointestinal Tract
Bacteroidetes
Proteobacteria
Ileum

Are the gut microbial systems of giant pandas unstable?

Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.

Research output: Contribution to journalArticle

Open Access
Ailuropoda melanoleuca
intestinal microorganisms
digestive system
Clostridiaceae
Pseudomonadaceae
1 Citation (Scopus)

Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties

Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.

Research output: Contribution to journalArticle

colored varieties
Carps
Cyprinus carpio
Transcriptome
skin (animal)

Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)

Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.

Research output: Contribution to journalArticle

Open Access
chronic wasting disease
Odocoileus virginianus
deer
gene expression
gene
Open Access
Wild Animals
bioinformatics
Bioinformatics
wild animals
Nutrition

Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin

Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.

Research output: Contribution to journalArticle

Mississippi River
habitat use
population structure
river basin
field survey

Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin

Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Jan 1 2019, (Accepted/In press) In : Evolutionary Applications.

Research output: Contribution to journalArticle

Open Access
Mississippi
Carps
Mississippi River
Hypophthalmichthys molitrix
Rivers
2018
4 Citations (Scopus)

Adaptive evolution to a high purine and fat diet of carnivorans revealed by gut microbiomes and host genomes

Zhu, L., Wu, Q., Deng, C., Zhang, M., Zhang, C., Chen, H., Lu, G. & Wei, F., May 2018, In : Environmental microbiology. 20, 5, p. 1711-1722 12 p.

Research output: Contribution to journalArticle

Carnivora
High Fat Diet
purines
fat
Felidae
2 Citations (Scopus)

Endangered Père David’s deer genome provides insights into population recovering

Zhu, L., Deng, C., Zhao, X., Ding, J., Huang, H., Zhu, S., Wang, Z., Qin, S., Ding, Y., Lu, G. & Yang, Z., Dec 2018, In : Evolutionary Applications. 11, 10, p. 2040-2053 14 p.

Research output: Contribution to journalArticle

Deer
deer
genome
Genome
gene
2017
2 Citations (Scopus)

An integrated and comprehensive transcriptome reveals immune-related genes and signal pathways in topmouth culter (Culter alburnus)

Lei, S., Chen, X., Wang, J., Zhou, L., Zhang, Y., Zhang, G., Lu, G. & Wang, C., May 1 2017, In : Aquaculture Research. 48, 5, p. 2231-2242 12 p.

Research output: Contribution to journalArticle

transcriptome
signal transduction
disease resistance
gene
health and disease
1 Citation (Scopus)

A systems biology approach for modeling microbiomes using split graphs

Kim, S., Thapa, I., Lu, G., Zhu, L. & Ali, H. H., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2062-2068 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Systems Biology
Microbiota
Fish
Fishes
Chemical analysis
4 Citations (Scopus)

Complete genome sequences of Pseudomonas fluorescens bacteriophages isolated from freshwater samples in Omaha, Nebraska

Lu, G., Luhr, J., Stoecklein, A., Warner, P. & Tapprich, W. E., Jan 1 2017, In : Genome Announcements. 5, 12, e01501-16.

Research output: Contribution to journalArticle

Pseudomonas Phages
Pseudomonas fluorescens
Fresh Water
Genome
Regulator Genes

Evolutionary relationship of three mitten crabs (Eriocheir sp)revealed by mitogenome and 5S ribosomal DNA analysis

Chen, X., Wang, J., Huang, L., Yue, W., Zou, J., Yuan, C., Lu, G. & Wang, C., Nov 2017, In : Aquaculture and Fisheries. 2, 6, p. 256-261 6 p.

Research output: Contribution to journalArticle

Open Access
Eriocheir
ribosomal DNA
crab
crabs
Eriocheir sinensis
5 Citations (Scopus)

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

Wang, H., Zhang, C., Dou, Y., Yu, B., Liu, Y., Heng-Moss, T. M., Lu, G., Wachholtz, M., Bradshaw, J. D., Twigg, P., Scully, E., Palmer, N. & Sarath, G., Jan 30 2017, In : Gene. 599, p. 68-77 10 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Saccharum
Aphids
MicroRNAs
Insects
2 Citations (Scopus)

Selection of appropriate reference genes for qPCR in the Chinese mitten crab, Eriocheir sinensis (Decapoda, Varunidae)

Huang, S., Chen, X., Wang, J., Chen, J., Yue, W., Lu, W., Lu, G. & Wang, C., Jan 1 2017, In : Crustaceana. 90, 3, p. 275-296 22 p.

Research output: Contribution to journalArticle

Varunidae
Eriocheir sinensis
Decapoda
crab
gene
2016
6 Citations (Scopus)

Characterization of pikeperch (Sander lucioperca) transcriptome and development of SSR markers

Han, X., Ling, Q., Li, C., Wang, G., Xu, Z. & Lu, G., Jun 1 2016, In : Biochemical Systematics and Ecology. 66, p. 188-195 8 p.

Research output: Contribution to journalArticle

Sanders
Sander lucioperca
Transcriptome
transcriptome
Genes
6 Citations (Scopus)

Complete mitochondrial genomes of three mitten crabs, Eriocheir sinensis, E. Hepuensis, and E. Japonica

Wang, J., Huang, L., Cheng, Q., Lu, G. & Wang, C. H., Jan 1 2016, In : Mitochondrial DNA. 27, 2, p. 1175-1176 2 p.

Research output: Contribution to journalArticle

Mitochondrial Genome
Genes
Minisatellite Repeats
Transfer RNA
rRNA Genes
1 Citation (Scopus)

Model-based clustering with certainty estimation: Implication for clade assignment of influenza viruses

Zhang, S., Li, Z., Beland, K. & Lu, G., Jul 21 2016, In : BMC bioinformatics. 17, 1, 287.

Research output: Contribution to journalArticle

Model-based Clustering
Influenza
Hemagglutinins
Orthomyxoviridae
Viruses

The complete mitochondrial genome of the shoal chub, Macrhybopsis hyostoma

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 911-912 2 p.

Research output: Contribution to journalArticle

Cyprinidae
Mitochondrial Genome
Base Composition
Phylogeny
Transfer RNA

The complete mitochondrial genome of the silver chub, Macrhybopsis storeriana

Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 789-790 2 p.

Research output: Contribution to journalArticle

Cyprinidae
Mitochondrial Genome
Silver
Base Composition
Phylogeny
3 Citations (Scopus)

Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilis and Hypophthalmichthys molitrix) and their hybrids

Wang, J., Lamer, J. T., Gaughan, S., Wachholtz, M., Wang, C. & Lu, G., Dec 1 2016, In : Ecology and Evolution. 6, 23, p. 8452-8459 8 p.

Research output: Contribution to journalArticle

Hypophthalmichthys nobilis
Hypophthalmichthys molitrix
transcriptomics
carp
transcriptome
2015
30 Citations (Scopus)

Genetic diversity in oxytocin ligands and receptors in New World monkeys

Ren, D., Lu, G., Moriyama, H., Mustoe, A. C., Harrison, E. B. & French, J. A., May 4 2015, In : PloS one. 10, 5, e0125775.

Research output: Contribution to journalArticle

Platyrrhini
Oxytocin Receptors
Cebidae
oxytocin
Oxytocin
34 Citations (Scopus)

Transcriptomic variation of hepatopancreas reveals the energy metabolism and biological processes associated with molting in Chinese mitten crab, Eriocheir sinensis

Huang, S., Wang, J., Yue, W., Chen, J., Gaughan, S., Lu, W., Lu, G. & Wang, C., Sep 15 2015, In : Scientific reports. 5, 14015.

Research output: Contribution to journalArticle

Hepatopancreas
Biological Phenomena
Molting
Energy Metabolism
Genes
2014
23 Citations (Scopus)

Analysis of the skin transcriptome in two Oujiang color varieties of common carp

Wang, C., Wachholtz, M., Wang, J., Liao, X. & Lu, G., Mar 6 2014, In : PloS one. 9, 3, e90074.

Research output: Contribution to journalArticle

colored varieties
Carps
Gene Expression Profiling
Cyprinus carpio
transcriptome
9 Citations (Scopus)

Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene

Xu, J., Zhong, H. A., Madrahimov, A., Helikar, T. & Lu, G., Mar 1 2014, In : Infection, Genetics and Evolution. 22, p. 192-200 9 p.

Research output: Contribution to journalArticle

influenza
Phylogeny
Human Influenza
phylogeny
Swine
2013
15 Citations (Scopus)

Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle

Madrahimov, A., Helikar, T., Kowal, B., Lu, G. & Rogers, J. A., Jun 1 2013, In : Bulletin of Mathematical Biology. 75, 6, p. 988-1011 24 p.

Research output: Contribution to journalArticle

influenza
Influenza
Orthomyxoviridae
Viruses
Replication
427 Citations (Scopus)

The Tree of Life and a New Classification of Bony Fishes

Betancur-R, R., Broughton, R. E., Wiley, E. O., Carpenter, K., López, J. A., Li, C., Holcroft, N. I., Arcila, D., Sanciangco, M., Cureton, J. C., Zhang, F., Buser, T., Campbell, M. A., Ballesteros, J. A., Roa-Varon, A., Willis, S., Borden, W. C., Rowley, T., Reneau, P. C., Hough, D. J. & 4 others, Lu, G., Grande, T., Arratia, G. & Ortí, G., Apr 29 2013, In : PLoS Currents. APR 2013, ecurrents.tol.53ba26640df0ccaee75bb165c8c26288.

Research output: Contribution to journalArticle

Fishes
Phylogeny
Perciformes
Uncertainty
Communication
52 Citations (Scopus)

Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species

Liao, X., Cheng, L., Xu, P., Lu, G., Wachholtz, M., Sun, X. & Chen, S., Apr 22 2013, In : PloS one. 8, 4, e62308.

Research output: Contribution to journalArticle

Carassius
Aquaculture
unigenes
Goldfish
Carps
11 Citations (Scopus)

Transcriptome analysis of two buffalograss cultivars

Wachholtz, M., Heng-Moss, T., Twigg, P., Baird, L., Lu, G. & Amundsen, K., Sep 11 2013, In : BMC genomics. 14, 1, 613.

Research output: Contribution to journalArticle

Gene Expression Profiling
Protein-Serine-Threonine Kinases
Transferases
Poaceae
Titanium
2012
11 Citations (Scopus)

Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes

Chenghui, W., Wang, J., Yang, J., Lu, G., Song, X., Chen, Q., Xu, J., Yang, Q. & Li, S., May 1 2012, In : Molecular Biology Reports. 39, 5, p. 6337-6342 6 p.

Research output: Contribution to journalArticle

Carps
Phylogeny
Fishes
Mitochondrial Genome
Genes
3 Citations (Scopus)
Site selection
Vaccines
Influenza Vaccines
Hemagglutinins
Viruses
24 Citations (Scopus)

Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses

Xu, J., Davis, C. T., Christman, M. C., Rivailler, P., Zhong, H. A., Donis, R. O. & Lu, G., Jul 11 2012, In : PloS one. 7, 7, e38665.

Research output: Contribution to journalArticle

sialidase
Neuraminidase
influenza
Human Influenza
Sequence Analysis
8 Citations (Scopus)

Microsatellite genetic diversity and differentiation of native and introduced grass carp populations in three continents

Chen, Q., Wang, C., Lu, G., Zhao, J., Chapman, D. C., Zsigmond, J. & Li, S., Jun 1 2012, In : Genetica. 140, 4-6, p. 115-123 9 p.

Research output: Contribution to journalArticle

Ctenopharyngodon idella
Carps
Microsatellite Repeats
microsatellite repeats
Rivers
5 Citations (Scopus)

PhyloMarker–-A Tool for Mining Phylogenetic Markers through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny

Lei, R., Rowley, T. W., Zhu, L., Bailey, C. A., Engberg, S. E., Wood, M. L., Christman, M. C., Perry, G. H., Louis, E. E. & Lu, G., Jan 1 2012, In : Evolutionary Bioinformatics. 8

Research output: Contribution to journalReview article

Open Access
Cheirogaleidae
Microcebus
Phylogeny
phylogeny
genome
2011
13 Citations (Scopus)

Evolutionary dynamics of influenza A nucleoprotein (NP) lineages revealed by large-scale sequence analyses

Xu, J., Christman, M. C., Donis, R. O. & Lu, G., Dec 1 2011, In : Infection, Genetics and Evolution. 11, 8, p. 2125-2132 8 p.

Research output: Contribution to journalArticle

nucleoproteins
influenza
Nucleoproteins
Human Influenza
Sequence Analysis
2 Citations (Scopus)

Evolution of influenza viral neuraminidase (NA) revealed by large-scale sequence analysis.

Xu, J. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 405-408 4 p.

Research output: Contribution to journalArticle

Influenza B virus
Molecular Evolution
Influenza A virus
Neuraminidase
Phylogeny

Large-scale sequence analysis of influenza A hemagglutinin (HA): insights into a unified system for lineage assignment.

Rickert, J., Xu, J., Christman, M. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 410-413 4 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Pandemic (H1N1) 2009 virus revisited: An evolutionary retrospective

Christman, M. C., Kedwaii, A., Xu, J., Donis, R. O. & Lu, G., Jul 1 2011, In : Infection, Genetics and Evolution. 11, 5, p. 803-811 9 p.

Research output: Contribution to journalReview article

H1N1 Subtype Influenza A Virus
Pandemics
pandemic
Influenza A virus
virus
6 Citations (Scopus)

Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River, China

Zhao, J., Cao, Y., Li, S., Li, J., Deng, Y. & Lu, G., Jan 1 2011, In : Environmental Biology of Fishes. 90, 1, p. 85-93 9 p.

Research output: Contribution to journalArticle

Ctenopharyngodon idella
Yangtze River
genetic structure
population genetics
grass
4 Citations (Scopus)

Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis

Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2011, In : Environmental Biology of Fishes. 92, 4, p. 503-511 9 p.

Research output: Contribution to journalArticle

Hypophthalmichthys molitrix
genetic differentiation
silver
mitochondrial DNA
genetic variation
2010
7 Citations (Scopus)

Applying neural networks to classify influenza virus antigenic types and hosts

Attaluri, P. K., Chen, Z. & Lu, G., Aug 20 2010, 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010. p. 279-284 6 p. 5510726. (2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Viruses
Neural networks
Genes
Nucleotides
Decision trees
4 Citations (Scopus)

Cloning, characterization and expression of the pepsinogen C from the golden mandarin fish Siniperca scherzeri (Teleostei: Perciformes)

Deng, Y., Zhao, J., Lu, G., Wu, X. & Tao, Y., Aug 3 2010, In : Fisheries Science. 76, 5, p. 819-826 8 p.

Research output: Contribution to journalArticle

pepsinogen
Perciformes
mandarins
molecular cloning
fish
7 Citations (Scopus)

Genetic diversity and variation of mitochondrial DNA in native and introduced bighead carp

Li, S. F., Yang, Q. L., Xu, JIA. WEI., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2010, In : Transactions of the American Fisheries Society. 139, 4, p. 937-946 10 p.

Research output: Contribution to journalArticle

Hypophthalmichthys nobilis
mitochondrial DNA
genetic variation
river system
river
163 Citations (Scopus)

On the origin of species: Insights from the ecological genomics of lake whitefish

Bernatchez, L., Renaut, S., Whiteley, A. R., Derome, N., Jeukens, J., Landry, L., Lu, G., Nolte, A. W., Østbye, K., Rogers, S. M. & St-Cyr, J., Jun 12 2010, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 365, 1547, p. 1783-1800 18 p.

Research output: Contribution to journalArticle

Salmonidae
Coregonus clupeaformis
Lakes
Genomics
genomics

Sequence comparison using multi-order Markov chains

Fang, X., Lu, G. & Zhang, S., Sep 6 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5515258. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Markov Chains
DNA sequences
Markov processes
Phylogeny
Experiments
2009
12 Citations (Scopus)

7TMRmine: A Web server for hierarchical mining of 7TMR proteins

Lu, G., Wang, Z., Jones, A. M. & Moriyama, E., Jun 19 2009, In : BMC genomics. 10, 275.

Research output: Contribution to journalArticle

Genome
Proteins
Pharmacogenetics
Protein Sequence Analysis
Computational Biology
17 Citations (Scopus)

A comparison of complete mitochondrial genomes of silver carp hypophthalmichthys molitrix and bighead carp hypophthalmichthys nobilis: Implications for their taxonomic relationship and phylogeny

Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chen, Q., Chapman, D. C. & Lu, G., May 1 2009, In : Journal of Fish Biology. 74, 8, p. 1787-1803 17 p.

Research output: Contribution to journalArticle

Hypophthalmichthys nobilis
Hypophthalmichthys molitrix
silver
phylogeny
genome
16 Citations (Scopus)

Analysis of genetic variation in grass carp (Ctenopharyngodon idellus) from native and colonized regions using ISSR markers

Chen, Q., Wang, C. H., Lu, G., Song, X., Xu, J. W., Yang, Q. L. & Li, S. F., Nov 1 2009, In : Biochemical Systematics and Ecology. 37, 5, p. 549-555 7 p.

Research output: Contribution to journalArticle

Ctenopharyngodon idella
Carps
Microsatellite Repeats
genetic variation
Rivers
45 Citations (Scopus)

Gene expression profiling of tolerant barley in response to diuraphis noxia (Hemiptera: Aphididae) feeding

Gutsche, A., Heng-Moss, T., Sarath, G., Twigg, P., Xia, Y., Lu, G. & Mornhinweg, D., Apr 1 2009, In : Bulletin of Entomological Research. 99, 2, p. 163-173 11 p.

Research output: Contribution to journalArticle

Diuraphis noxia
Aphididae
Hemiptera
barley
gene expression
5 Citations (Scopus)

Integrating decision tree and hidden markov model (hmm) for subtype prediction of human influenza a virus

Attaluri, P. K., Chen, Z., Weerakoon, A. M. & Lu, G., Aug 17 2009, Cutting-Edge Research Topics on Multiple Criteria Decision Making: 20th International Conference, MCDM 2009, Chengdu/Jiuzhaigou, Proceedings. p. 52-58 7 p. (Communications in Computer and Information Science; vol. 35).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hidden Markov models
Decision trees
Viruses
Public health
Bioinformatics