Research Output per year
Research Output
2020
Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau
Xu, L. L., Chen, H., Zhang, M., Zhu, W., Chang, Q., Lu, G., Chen, Y., Jiang, J. & Zhu, L., Jan 1 2020, (Accepted/In press) In : MicrobiologyOpen. e1004.Research output: Contribution to journal › Article
Open Access
Lessons from bamboo-eating pandas and their gut microbiome: Gut microbiome flow and applications
Zhang, Z., Hu, T., Lu, G. & Zhu, L., Apr 1 2020, In : Evolutionary Applications. 13, 4, p. 615-619 5 p.Research output: Contribution to journal › Article
Open Access
Resolving the genetic paradox of invasions: Preadapted genomes and postintroduction hybridization of bigheaded carps in the Mississippi River Basin
Wang, J., Gaughan, S., Lamer, J. T., Deng, C., Hu, W., Wachholtz, M., Qin, S., Nie, H., Liao, X., Ling, Q., Li, W., Zhu, L., Bernatchez, L., Wang, C. & Lu, G., Feb 1 2020, In : Evolutionary Applications. 13, 2, p. 263-277 15 p.Research output: Contribution to journal › Article
Open Access
2019
Age-related changes in the gut microbiota of the Chinese giant salamander (Andrias davidianus)
Zhang, M., Gaughan, S., Chang, Q., Chen, H., Lu, G., Wang, X., Xu, L., Zhu, L. & Jiang, J., Jul 2019, In : MicrobiologyOpen. 8, 7, e00778.Research output: Contribution to journal › Article
Open Access
1
Scopus
citations
Are the gut microbial systems of giant pandas unstable?
Yao, R., Yang, Z., Zhang, Z., Hu, T., Chen, H., Huang, F., Gu, X., Yang, X., Lu, G. & Zhu, L., Sep 2019, In : Heliyon. 5, 9, e02480.Research output: Contribution to journal › Article
Open Access
1
Scopus
citations
Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties
Du, J., Chen, X., Wang, J., Chen, H., Yue, W., Lu, G. & Wang, C., Feb 15 2019, In : Fish Physiology and Biochemistry. 45, 1, p. 177-185 9 p.Research output: Contribution to journal › Article
1
Scopus
citations
Differential gene expression in chronic wasting disease-positive white-tailed deer (Odocoileus virginianus)
Trone-Launer, E. K., Wang, J., Lu, G., Mateus-Pinilla, N. E., Zick, P. R., Lamer, J. T., Shelton, P. A. & Jacques, C. N., Nov 1 2019, In : Ecology and Evolution. 9, 22, p. 12600-12612 13 p.Research output: Contribution to journal › Article
Open Access
Evaluation of the Function of Wild Animal Gut Microbiomes Using Next-Generation Sequencing and Bioinformatics and its Relevance to Animal Conservation
Yao, R., Xu, L., Lu, G. & Zhu, L., May 1 2019, In : Evolutionary Bioinformatics. 15Research output: Contribution to journal › Comment/debate
Open Access
1
Scopus
citations
Habitat use and population structure of the shoal chub (Macrhybopsis hyostoma) in the upper Mississippi River basin
Gaughan, S., Steffensen, K. & Lu, G., Jun 15 2019, In : Environmental Biology of Fishes. 102, 6, p. 901-914 14 p.Research output: Contribution to journal › Article
2018
Adaptive evolution to a high purine and fat diet of carnivorans revealed by gut microbiomes and host genomes
Zhu, L., Wu, Q., Deng, C., Zhang, M., Zhang, C., Chen, H., Lu, G. & Wei, F., May 2018, In : Environmental microbiology. 20, 5, p. 1711-1722 12 p.Research output: Contribution to journal › Article
5
Scopus
citations
Endangered Père David’s deer genome provides insights into population recovering
Zhu, L., Deng, C., Zhao, X., Ding, J., Huang, H., Zhu, S., Wang, Z., Qin, S., Ding, Y., Lu, G. & Yang, Z., Dec 2018, In : Evolutionary Applications. 11, 10, p. 2040-2053 14 p.Research output: Contribution to journal › Article
3
Scopus
citations
2017
An integrated and comprehensive transcriptome reveals immune-related genes and signal pathways in topmouth culter (Culter alburnus)
Lei, S., Chen, X., Wang, J., Zhou, L., Zhang, Y., Zhang, G., Lu, G. & Wang, C., May 1 2017, In : Aquaculture Research. 48, 5, p. 2231-2242 12 p.Research output: Contribution to journal › Article
2
Scopus
citations
A systems biology approach for modeling microbiomes using split graphs
Kim, S., Thapa, I., Lu, G., Zhu, L. & Ali, H. H., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2062-2068 7 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
2
Scopus
citations
Complete genome sequences of Pseudomonas fluorescens bacteriophages isolated from freshwater samples in Omaha, Nebraska
Lu, G., Luhr, J., Stoecklein, A., Warner, P. & Tapprich, W. E., Jan 1 2017, In : Genome Announcements. 5, 12, e01501-16.Research output: Contribution to journal › Article
4
Scopus
citations
Evolutionary relationship of three mitten crabs (Eriocheir sp)revealed by mitogenome and 5S ribosomal DNA analysis
Chen, X., Wang, J., Huang, L., Yue, W., Zou, J., Yuan, C., Lu, G. & Wang, C., Nov 2017, In : Aquaculture and Fisheries. 2, 6, p. 256-261 6 p.Research output: Contribution to journal › Article
Open Access
1
Scopus
citations
Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing
Wang, H., Zhang, C., Dou, Y., Yu, B., Liu, Y., Heng-Moss, T. M., Lu, G., Wachholtz, M., Bradshaw, J. D., Twigg, P., Scully, E., Palmer, N. & Sarath, G., Jan 30 2017, In : Gene. 599, p. 68-77 10 p.Research output: Contribution to journal › Article
7
Scopus
citations
Selection of appropriate reference genes for qPCR in the Chinese mitten crab, Eriocheir sinensis (Decapoda, Varunidae)
Huang, S., Chen, X., Wang, J., Chen, J., Yue, W., Lu, W., Lu, G. & Wang, C., Jan 1 2017, In : Crustaceana. 90, 3, p. 275-296 22 p.Research output: Contribution to journal › Article
3
Scopus
citations
2016
Characterization of pikeperch (Sander lucioperca) transcriptome and development of SSR markers
Han, X., Ling, Q., Li, C., Wang, G., Xu, Z. & Lu, G., Jun 1 2016, In : Biochemical Systematics and Ecology. 66, p. 188-195 8 p.Research output: Contribution to journal › Article
8
Scopus
citations
Complete mitochondrial genomes of three mitten crabs, Eriocheir sinensis, E. Hepuensis, and E. Japonica
Wang, J., Huang, L., Cheng, Q., Lu, G. & Wang, C. H., Jan 1 2016, In : Mitochondrial DNA. 27, 2, p. 1175-1176 2 p.Research output: Contribution to journal › Article
8
Scopus
citations
Model-based clustering with certainty estimation: Implication for clade assignment of influenza viruses
Zhang, S., Li, Z., Beland, K. & Lu, G., Jul 21 2016, In : BMC bioinformatics. 17, 1, 287.Research output: Contribution to journal › Article
1
Scopus
citations
The complete mitochondrial genome of the shoal chub, Macrhybopsis hyostoma
Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 911-912 2 p.Research output: Contribution to journal › Article
The complete mitochondrial genome of the silver chub, Macrhybopsis storeriana
Gaughan, S., Johnson, R., Wang, J., Wachholtz, M., Steffensen, K., King, T. & Lu, G., Jan 1 2016, In : Mitochondrial DNA Part B: Resources. 1, 1, p. 789-790 2 p.Research output: Contribution to journal › Article
Transcriptomic comparison of invasive bigheaded carps (Hypophthalmichthys nobilis and Hypophthalmichthys molitrix) and their hybrids
Wang, J., Lamer, J. T., Gaughan, S., Wachholtz, M., Wang, C. & Lu, G., Dec 1 2016, In : Ecology and Evolution. 6, 23, p. 8452-8459 8 p.Research output: Contribution to journal › Article
3
Scopus
citations
2015
Genetic diversity in oxytocin ligands and receptors in New World monkeys
Ren, D., Lu, G., Moriyama, H., Mustoe, A. C., Harrison, E. B. & French, J. A., May 4 2015, In : PloS one. 10, 5, e0125775.Research output: Contribution to journal › Article
33
Scopus
citations
Transcriptomic variation of hepatopancreas reveals the energy metabolism and biological processes associated with molting in Chinese mitten crab, Eriocheir sinensis
Huang, S., Wang, J., Yue, W., Chen, J., Gaughan, S., Lu, W., Lu, G. & Wang, C., Sep 15 2015, In : Scientific reports. 5, 14015.Research output: Contribution to journal › Article
39
Scopus
citations
2014
Analysis of the skin transcriptome in two Oujiang color varieties of common carp
Wang, C., Wachholtz, M., Wang, J., Liao, X. & Lu, G., Mar 6 2014, In : PloS one. 9, 3, e90074.Research output: Contribution to journal › Article
24
Scopus
citations
Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene
Xu, J., Zhong, H. A., Madrahimov, A., Helikar, T. & Lu, G., Mar 1 2014, In : Infection, Genetics and Evolution. 22, p. 192-200 9 p.Research output: Contribution to journal › Article
9
Scopus
citations
2013
Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle
Madrahimov, A., Helikar, T., Kowal, B., Lu, G. & Rogers, J. A., Jun 1 2013, In : Bulletin of Mathematical Biology. 75, 6, p. 988-1011 24 p.Research output: Contribution to journal › Article
15
Scopus
citations
The Tree of Life and a New Classification of Bony Fishes
Betancur-R, R., Broughton, R. E., Wiley, E. O., Carpenter, K., López, J. A., Li, C., Holcroft, N. I., Arcila, D., Sanciangco, M., Cureton, J. C., Zhang, F., Buser, T., Campbell, M. A., Ballesteros, J. A., Roa-Varon, A., Willis, S., Borden, W. C., Rowley, T., Reneau, P. C., Hough, D. J. & 4 others, , Apr 29 2013, In : PLoS Currents. APR 2013, ecurrents.tol.53ba26640df0ccaee75bb165c8c26288.Research output: Contribution to journal › Article
445
Scopus
citations
Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species
Liao, X., Cheng, L., Xu, P., Lu, G., Wachholtz, M., Sun, X. & Chen, S., Apr 22 2013, In : PloS one. 8, 4, e62308.Research output: Contribution to journal › Article
54
Scopus
citations
Transcriptome analysis of two buffalograss cultivars
Wachholtz, M., Heng-Moss, T., Twigg, P., Baird, L., Lu, G. & Amundsen, K., Sep 11 2013, In : BMC genomics. 14, 1, 613.Research output: Contribution to journal › Article
11
Scopus
citations
2012
Complete mitogenome sequence of black carp (Mylopharyngodon piceus) and its use for molecular phylogeny of leuciscine fishes
Chenghui, W., Wang, J., Yang, J., Lu, G., Song, X., Chen, Q., Xu, J., Yang, Q. & Li, S., May 1 2012, In : Molecular Biology Reports. 39, 5, p. 6337-6342 6 p.Research output: Contribution to journal › Article
11
Scopus
citations
Computational analysis of adaptive antigenic mutations of the human influenza hemagglutinin for vaccine strain selection
Rickert, J. D., Herpy, T. A., Zhong, H. A. & Lu, G., Mar 1 2012, In : International Journal of Bioinformatics Research and Applications. 8, 1-2, p. 81-98 18 p.Research output: Contribution to journal › Article
3
Scopus
citations
Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses
Xu, J., Davis, C. T., Christman, M. C., Rivailler, P., Zhong, H. A., Donis, R. O. & Lu, G., Jul 11 2012, In : PloS one. 7, 7, e38665.Research output: Contribution to journal › Article
24
Scopus
citations
Microsatellite genetic diversity and differentiation of native and introduced grass carp populations in three continents
Chen, Q., Wang, C., Lu, G., Zhao, J., Chapman, D. C., Zsigmond, J. & Li, S., Jun 1 2012, In : Genetica. 140, 4-6, p. 115-123 9 p.Research output: Contribution to journal › Article
9
Scopus
citations
PhyloMarker–-A Tool for Mining Phylogenetic Markers through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny
Lei, R., Rowley, T. W., Zhu, L., Bailey, C. A., Engberg, S. E., Wood, M. L., Christman, M. C., Perry, G. H., Louis, E. E. & Lu, G., Jan 1 2012, In : Evolutionary Bioinformatics. 8Research output: Contribution to journal › Review article
Open Access
6
Scopus
citations
2011
Evolutionary dynamics of influenza A nucleoprotein (NP) lineages revealed by large-scale sequence analyses
Xu, J., Christman, M. C., Donis, R. O. & Lu, G., Dec 1 2011, In : Infection, Genetics and Evolution. 11, 8, p. 2125-2132 8 p.Research output: Contribution to journal › Article
14
Scopus
citations
Evolution of influenza viral neuraminidase (NA) revealed by large-scale sequence analysis.
Xu, J. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 405-408 4 p.Research output: Contribution to journal › Article
2
Scopus
citations
Large-scale sequence analysis of influenza A hemagglutinin (HA): insights into a unified system for lineage assignment.
Rickert, J., Xu, J., Christman, M. & Lu, G., May 1 2011, In : Influenza and other respiratory viruses. 5 Suppl 1, p. 410-413 4 p.Research output: Contribution to journal › Article
Pandemic (H1N1) 2009 virus revisited: An evolutionary retrospective
Christman, M. C., Kedwaii, A., Xu, J., Donis, R. O. & Lu, G., Jul 1 2011, In : Infection, Genetics and Evolution. 11, 5, p. 803-811 9 p.Research output: Contribution to journal › Review article
43
Scopus
citations
Population genetic structure and evolutionary history of grass carp Ctenopharyngodon idella in the Yangtze River, China
Zhao, J., Cao, Y., Li, S., Li, J., Deng, Y. & Lu, G., Jan 1 2011, In : Environmental Biology of Fishes. 90, 1, p. 85-93 9 p.Research output: Contribution to journal › Article
7
Scopus
citations
Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis
Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2011, In : Environmental Biology of Fishes. 92, 4, p. 503-511 9 p.Research output: Contribution to journal › Article
5
Scopus
citations
2010
Applying neural networks to classify influenza virus antigenic types and hosts
Attaluri, P. K., Chen, Z. & Lu, G., Aug 20 2010, 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010. p. 279-284 6 p. 5510726. (2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
8
Scopus
citations
Cloning, characterization and expression of the pepsinogen C from the golden mandarin fish Siniperca scherzeri (Teleostei: Perciformes)
Deng, Y., Zhao, J., Lu, G., Wu, X. & Tao, Y., Aug 3 2010, In : Fisheries Science. 76, 5, p. 819-826 8 p.Research output: Contribution to journal › Article
4
Scopus
citations
Genetic diversity and variation of mitochondrial DNA in native and introduced bighead carp
Li, S. F., Yang, Q. L., Xu, JIA. WEI., Wang, C. H., Chapman, D. C. & Lu, G., Dec 1 2010, In : Transactions of the American Fisheries Society. 139, 4, p. 937-946 10 p.Research output: Contribution to journal › Article
8
Scopus
citations
On the origin of species: Insights from the ecological genomics of lake whitefish
Bernatchez, L., Renaut, S., Whiteley, A. R., Derome, N., Jeukens, J., Landry, L., Lu, G., Nolte, A. W., Østbye, K., Rogers, S. M. & St-Cyr, J., Jun 12 2010, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 365, 1547, p. 1783-1800 18 p.Research output: Contribution to journal › Article
167
Scopus
citations
Sequence comparison using multi-order Markov chains
Fang, X., Lu, G. & Zhang, S., Sep 6 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5515258. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
2009
7TMRmine: A Web server for hierarchical mining of 7TMR proteins
Lu, G., Wang, Z., Jones, A. M. & Moriyama, E., Jun 19 2009, In : BMC genomics. 10, 275.Research output: Contribution to journal › Article
12
Scopus
citations
A comparison of complete mitochondrial genomes of silver carp hypophthalmichthys molitrix and bighead carp hypophthalmichthys nobilis: Implications for their taxonomic relationship and phylogeny
Li, S. F., Xu, J. W., Yang, Q. L., Wang, C. H., Chen, Q., Chapman, D. C. & Lu, G., May 1 2009, In : Journal of Fish Biology. 74, 8, p. 1787-1803 17 p.Research output: Contribution to journal › Article
18
Scopus
citations
Analysis of genetic variation in grass carp (Ctenopharyngodon idellus) from native and colonized regions using ISSR markers
Chen, Q., Wang, C. H., Lu, G., Song, X., Xu, J. W., Yang, Q. L. & Li, S. F., Nov 1 2009, In : Biochemical Systematics and Ecology. 37, 5, p. 549-555 7 p.Research output: Contribution to journal › Article
16
Scopus
citations