Daniel C Ciobanu, PhD

Associate Professor

  • 1284 Citations
  • 18 h-Index
20002019
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Research Output 2000 2019

  • 1284 Citations
  • 18 h-Index
  • 39 Article
  • 1 Chapter
  • 1 Review article
2019

A genome-wide association study for gestation length in swine

See, G. M., Trenhaile-Grannemann, M. D., Spangler, M. L., Ciobanu, D. C. & Mote, B. E., Oct 1 2019, In : Animal genetics. 50, 5, p. 539-542 4 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Swine
pregnancy
piglets
Pregnancy

Detection of atypical porcine pestivirus genome in newborn piglets affected by congenital tremor and high preweaning mortality

Sutton, K. M., Lahmers, K. K., Harris, S. P., Wijesena, H. R., Mote, B. E., Kachman, S. D., Borza, T. & Ciobanu, D. C., Oct 3 2019, In : Journal of animal science. 97, 10, p. 4093-4100 8 p.

Research output: Contribution to journalArticle

Open Access
Pestivirus
Tremor
piglets
neonates
Swine

Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population

Perez-Munoz, M. E., McKnite, A. M., Williams, E. G., Auwerx, J., Williams, R. W., Peterson, D. A. & Ciobanu, D. C., Jan 1 2019, In : PloS one. 14, 10, e0224100.

Research output: Contribution to journalArticle

Open Access
Cecum
Population Genetics
Nutrition
cecum
Fats

Evaluation of genotype quality parameters for SowPro90, a new genotyping array for swine1

Wijesena, H. R., Rohrer, G. A., Nonneman, D. J., Keel, B. N., Petersen, J. L., Kachman, S. D. & Ciobanu, D. C., Jul 30 2019, In : Journal of animal science. 97, 8, p. 3262-3273 12 p.

Research output: Contribution to journalArticle

Open Access
genotyping
Single Nucleotide Polymorphism
Genotype
genotype
genomics
3 Citations (Scopus)

Genome to phenome: Improving animal health, production, and well-being - A new USDA blueprint for animal genome research 2018-2027

Agricultural Animal Genomics Community, Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 327.

Research output: Contribution to journalReview article

Open Access
United States Department of Agriculture
Genome
Genomics
Health
Research

Genome-wide association analysis for porcine reproductive and respiratory syndrome virus susceptibility traits in two genetic populations of pigs1

Walker, L. R., Jobman, E. E., Sutton, K. M., Wittler, JN., Johnson, R. K. & Ciobanu, D. C., Jul 30 2019, In : Journal of animal science. 97, 8, p. 3253-3261 9 p.

Research output: Contribution to journalArticle

Open Access
Porcine respiratory and reproductive syndrome virus
Porcine reproductive and respiratory syndrome virus
Genome-Wide Association Study
Population Genetics
population genetics
2018

Synaptogyrin-2 influences replication of Porcine circovirus 2

Walker, L. R., Engle, T. B., Vu, H. L., Tosky, E. R., Nonneman, D. J., Smith, T. P. L., Borza, T., Burkey, T. E., Plastow, G. S., Kachman, S. D. & Ciobanu, D. C., Oct 2018, In : PLoS genetics. 14, 10, e1007750.

Research output: Contribution to journalArticle

Synaptogyrins
Circovirus
Porcine circovirus-2
viral load
Viral Load
2017
1 Citation (Scopus)

A 16.7 kb deletion in Sipa1l3 is associated with juvenile cataract in mice

Walker, L. R., Tosky, E. R., Sutton, K. M., Griess, R., Abebe, M. D., Barnes, S. Y., Cunnigham, T., Kachman, S. D., Nielsen, M. K. & Ciobanu, D. C., Dec 1 2017, In : Mammalian Genome. 28, 11-12, p. 515-519 5 p.

Research output: Contribution to journalArticle

Cataract
Lenses
Exons
Alleles
Haplotypes
2 Citations (Scopus)

Genomics Symposium: Using genomic approaches to uncover sources of variation in age at puberty and reproductive longevity in sows

Wijesena, H. R., Lents, C. A., Riethoven, J. J., Trenhaile-Grannemann, M. D., Thorson, J. F., Keel, B. N., Miller, P. S., Spangler, M. L., Kachman, S. D. & Ciobanu, D. C., Sep 2017, In : Journal of animal science. 95, 9, p. 4196-4205 10 p.

Research output: Contribution to journalArticle

puberty
Puberty
Genomics
sows
genomics
2016
2 Citations (Scopus)
Circovirus
Prevotella
Porcine circovirus-2
multivariate analysis
Swine
50 Citations (Scopus)

Joint mouse-human phenome-wide association to test gene function and disease risk

Wang, X., Pandey, A. K., Mulligan, M. K., Williams, E. G., Mozhui, K., Li, Z., Jovaisaite, V., Quarles, L. D., Xiao, Z., Huang, J., Capra, J. A., Chen, Z., Taylor, W. L., Bastarache, L., Niu, X., Pollard, K. S., Ciobanu, D. C., Reznik, A. O., Tishkov, A. V., Zhulin, I. B. & 6 others, Peng, J., Nelson, S. F., Denny, J. C., Auwerx, J., Lu, L. & Williams, R. W., Feb 2 2016, In : Nature communications. 7, 10464.

Research output: Contribution to journalArticle

genes
mice
Genes
Fumarate Hydratase
Missense Mutation
5 Citations (Scopus)

Long-term selection for litter size in swine results in shifts in allelic frequency in regions involved in reproductive processes

Trenhaile, M. D., Petersen, J. L., Kachman, S. D., Johnson, R. K. & Ciobanu, D. C., Oct 1 2016, In : Animal genetics. 47, 5, p. 534-542 9 p.

Research output: Contribution to journalArticle

Litter Size
litter size
gene frequency
Swine
swine
2015
19 Citations (Scopus)

An application of MeSH enrichment analysis in livestock

Morota, G., Peñagaricano, F., Petersen, J. L., Ciobanu, D. C., Tsuyuzaki, K. & Nikaido, I., Aug 1 2015, In : Animal genetics. 46, 4, p. 381-387 7 p.

Research output: Contribution to journalArticle

Medical Subject Headings
Livestock
Gene Ontology
livestock
genes
3 Citations (Scopus)

Evaluation of reduced subsets of single nucleotide polymorphisms for the prediction of age at puberty in sows

Lucot, K. L., Spangler, M. L., Trenhaile, M. D., Kachman, S. D. & Ciobanu, D. C., Aug 1 2015, In : Animal genetics. 46, 4, p. 403-409 7 p.

Research output: Contribution to journalArticle

puberty
Puberty
single nucleotide polymorphism
Single Nucleotide Polymorphism
sows
4 Citations (Scopus)

Genome-wide analysis of TNF-alpha response in pigs challenged with porcine circovirus 2b

Kreikemeier, C. A., Engle, T. B., Lucot, K. L., Kachman, S. D., Burkey, T. E. & Ciobanu, D. C., Apr 1 2015, In : Animal genetics. 46, 2, p. 205-208 4 p.

Research output: Contribution to journalArticle

Circovirus
Porcine circovirus
Porcine circovirus-2
tumor necrosis factor-alpha
Swine
2014
22 Citations (Scopus)

Beef cattle body temperature during climatic stress: A genome-wide association study

Howard, J. T., Kachman, S. D., Snelling, W. M., Pollak, E. J., Ciobanu, D. C., Kuehn, L. A. & Spangler, M. L., Sep 2014, In : International Journal of Biometeorology. 58, 7, p. 1665-1672 8 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
body temperature
Body Temperature
Area Under Curve
genome
5 Citations (Scopus)

Genomic analysis of the differential response to experimental infection with porcine circovirus 2b

McKnite, A. M., Bundy, J. W., Moural, T. W., Tart, J. K., Johnson, T. P., Jobman, E. E., Barnes, S. Y., Qiu, J. K., Peterson, D. A., Harris, S. P., Rothschild, M. F., Galeota, J. A., Johnson, R. K., Kachman, S. D. & Ciobanu, D. C., Apr 1 2014, In : Animal genetics. 45, 2, p. 205-214 10 p.

Research output: Contribution to journalArticle

Circovirus
Porcine circovirus
viral load
Viral Load
Viremia
6 Citations (Scopus)

Variation in time and magnitude of immune response and viremia in experimental challenges with Porcine circovirus 2b

Engle, T. B., Jobman, E. E., Moural, T. W., McKnite, A. M., Bundy, J. W., Barnes, S. Y., Davis, E. H., Galeota, J. A., Burkey, T. E., Plastow, G. S., Kachman, S. D. & Ciobanu, D. C., Jan 1 2014, In : BMC Veterinary Research. 10, 1, 286.

Research output: Contribution to journalArticle

Circovirus
Porcine circovirus
Viremia
viremia
Swine
2013
19 Citations (Scopus)

Genome-wide prediction of age at puberty and reproductive longevity in sows

Tart, J. K., Johnson, R. K., Bundy, J. W., Ferdinand, N. N., McKnite, A. M., Wood, J. R., Miller, P. S., Rothschild, M. F., Spangler, M. L., Garrick, D. J., Kachman, S. D. & Ciobanu, D. C., Aug 1 2013, In : Animal genetics. 44, 4, p. 387-397 11 p.

Research output: Contribution to journalArticle

puberty
Puberty
parity (reproduction)
Parity
sows
2012
113 Citations (Scopus)

Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits

McKnite, A. M., Perez-Munoz, M. E., Lu, L., Williams, E. G., Brewer, S., Andreux, P. A., Bastiaansen, J. W. M., Wang, X., Kachman, S. D., Auwerx, J., Williams, R. W., Benson, A. K., Peterson, D. A. & Ciobanu, D. C., Jun 18 2012, In : PloS one. 7, 6, e39191.

Research output: Contribution to journalArticle

Quantitative Trait Loci
intestinal microorganisms
quantitative trait loci
Genes
mice
2011
23 Citations (Scopus)

Genetic modulation of horizontal cell number in the mouse retina

Whitney, I. E., Raven, M. A., Ciobanu, D. C., Poché, R. A., Ding, Q., Elshatory, Y., Gan, L., Williams, R. W. & Reese, B. E., Jun 7 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 23, p. 9697-9702 6 p.

Research output: Contribution to journalArticle

Retina
Cell Count
E-Box Elements
Genes
Chromosomes, Human, Pair 13
40 Citations (Scopus)

Genetics of meat quality and carcass traits

Ciobanu, D. C., Lonergan, S. M. & Huff-Lonergan, E. J., Jan 21 2011, The Genetics of the Pig: Second Edition. CABI Publishing, p. 355-389 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

carcass characteristics
Meat
meat quality
meat carcasses
2010
49 Citations (Scopus)

A gene-based SNP linkage map for pacific white shrimp, Litopenaeus vannamei

Du, Z. Q., Ciobanu, D. C., Onteru, S. K., Gorbach, D., Mileham, A. J., Jaramillo, G. & Rothschild, M. F., Jun 1 2010, In : Animal genetics. 41, 3, p. 286-294 9 p.

Research output: Contribution to journalArticle

Litopenaeus vannamei
single nucleotide polymorphism
chromosome mapping
Single Nucleotide Polymorphism
shrimp
33 Citations (Scopus)

A major SNP resource for dissection of phenotypic and genetic variation in Pacific white shrimp (Litopenaeus vannamei)

Ciobanu, D. C., Bastiaansen, J. W. M., Magrin, J., Rocha, J. L., Jiang, D. H., Yu, N., Geiger, B., Deeb, N., Rocha, D., Gong, H., Kinghorn, B. P., Plastow, G. S., Van Der Steen, H. A. M. & Mileham, A. J., Feb 1 2010, In : Animal genetics. 41, 1, p. 39-47 9 p.

Research output: Contribution to journalArticle

Litopenaeus vannamei
phenotypic variation
single nucleotide polymorphism
Single Nucleotide Polymorphism
Dissection
46 Citations (Scopus)

Detection, validation, and downstream analysis of allelic variation in gene expression

Ciobanu, D. C., Lu, L., Mozhui, K., Wang, X., Jagalur, M., Morris, J. A., Taylor, W. L., Dietz, K., Simon, P. & Williams, R. W., Jan 1 2010, In : Genetics. 184, 1, p. 119-128 10 p.

Research output: Contribution to journalArticle

Gene Expression
Genes
Single Nucleotide Polymorphism
Messenger RNA
Gene Targeting
4 Citations (Scopus)

Quantitative genotyping to estimate genetic contributions to pooled samples and genetic merit of the contributing entities

Kinghorn, B. P., Bastiaansen, J. W. M., Ciobanu, D. C. & van der STEEN, H. A. M., Mar 1 2010, In : Acta Agriculturae Scandinavica A: Animal Sciences. 60, 1, p. 3-12 10 p.

Research output: Contribution to journalArticle

genetic merit
genotyping
Gene Frequency
gene frequency
Single Nucleotide Polymorphism
143 Citations (Scopus)

Strain differences in stress responsivity are associated with divergent amygdala gene expression and glutamate-mediated neuronal excitability

Mozhui, K., Karlsson, R. M., Kash, T. L., Ihne, J., Norcross, M., Patel, S., Farrell, M. R., Hill, E. E., Graybeal, C., Martin, K. P., Camp, M., Fitzgerald, P. J., Ciobanu, D. C., Sprengel, R., Mishina, M., Wellman, C. L., Winder, D. G., Williams, R. W. & Holmes, A., Apr 14 2010, In : Journal of Neuroscience. 30, 15, p. 5357-5367 11 p.

Research output: Contribution to journalArticle

Amygdala
Glutamic Acid
Gene Expression
Anxiety
N-Methyl-D-Aspartate Receptors
2009
32 Citations (Scopus)

Multiple genes on chromosome 7 regulate dopaminergic amacrine cell number in the mouse retina

Whitney, I. E., Raven, M. A., Ciobanu, D. C., Williams, R. W. & Reese, B. E., Dec 1 2009, In : Investigative Ophthalmology and Visual Science. 50, 5, p. 1996-2003 8 p.

Research output: Contribution to journalArticle

Amacrine Cells
Chromosomes, Human, Pair 7
Retina
Cell Count
Genes
2008
66 Citations (Scopus)

Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression

Mozhui, K., Ciobanu, D. C., Schikorski, T., Wang, X., Lu, L. & Williams, R. W., Nov 1 2008, In : PLoS genetics. 4, 11, e1000260.

Research output: Contribution to journalArticle

Chromosomes, Human, Pair 1
Quantitative Trait Loci
dissection
gene expression
phenotype
13 Citations (Scopus)

Microarray analysis reveals distinctive signaling between the bed nucleus of the stria terminalis, nucleus accumbens, and dorsal striatum

Olsen, C. M., Huang, Y., Goodwin, S., Ciobanu, D. C., Lu, L., Sutter, T. R. & Winder, D. G., Feb 19 2008, In : Physiological genomics. 32, 3, p. 283-298 16 p.

Research output: Contribution to journalArticle

Septal Nuclei
Nucleus Accumbens
Microarray Analysis
Neuronal Plasticity
Gene Expression
188 Citations (Scopus)

Progress in reducing the pale, soft and exudative (PSE) problem in pork and poultry meat

Barbut, S., Sosnicki, A. A., Lonergan, S. M., Knapp, T., Ciobanu, D. C., Gatcliffe, L. J., Huff-Lonergan, E. & Wilson, E. W., May 1 2008, In : Meat Science. 79, 1, p. 46-63 18 p.

Research output: Contribution to journalArticle

poultry meat
Poultry
Meat
pork
Genetic Markers
2007
1 Citation (Scopus)

SNP discovery, expression and association analysis for the SDHD gene in pigs

Guimaraes, S. E. F., Rothschild, M. F., Ciobanu, D., Stahl, C. H. & Lonergan, S. M., Aug 1 2007, In : Journal of Animal Breeding and Genetics. 124, 4, p. 246-253 8 p.

Research output: Contribution to journalArticle

meat quality
single nucleotide polymorphism
Single Nucleotide Polymorphism
Swine
swine
4 Citations (Scopus)

SNP discovery, expression and association analysis for the SDHD gene in pigs

Guimaraes, S. E. F., Rothschild, M. F., Ciobanu, D., Stahl, C. H. & Lonergan, S. M., Jun 1 2007, In : Journal of Animal Breeding and Genetics. 124, 3, p. 139-143 5 p.

Research output: Contribution to journalArticle

meat quality
single nucleotide polymorphism
Single Nucleotide Polymorphism
Swine
swine
2004
49 Citations (Scopus)

A form of albinism in cattle is caused by a tyrosinase frameshift mutation

Schmutz, S. M., Berryere, T. G., Ciobanu, D. C., Mileham, A. J., Schmidtz, B. H. & Fredholm, M., Jan 1 2004, In : Mammalian Genome. 15, 1, p. 62-67 6 p.

Research output: Contribution to journalArticle

Albinism
Frameshift Mutation
Monophenol Monooxygenase
Mutation
Nonsense Codon
120 Citations (Scopus)

New alleles in calpastatin gene are associated with meat quality traits in pigs

Ciobanu, D. C., Bastiaansen, J. W. M., Lonergan, S. M., Thomsen, H., Dekkers, J. C. M., Plastow, G. S. & Rothschild, M. F., Oct 1 2004, In : Journal of animal science. 82, 10, p. 2829-2839 11 p.

Research output: Contribution to journalArticle

calpastatin
Meat
meat quality
Haplotypes
haplotypes
2002
4 Citations (Scopus)

Rapid communication: Mapping of the Ca2+ ATPase of fast twitch 1 skeletal muscle sarcoplasmic reticulum (ATP2A1) gene to porcine chromosome 3

Ciobanu, D. C., Zhang, Y. & Rothschild, M. F., May 2002, In : Journal of animal science. 80, 5, p. 1386-1387 2 p.

Research output: Contribution to journalArticle

Molecular Sequence Data
Fast-Twitch Muscle Fibers
sarcoplasmic reticulum
Chromosomes, Human, Pair 3
DNA Primers
2 Citations (Scopus)

Rapid communication: Mapping of the beta Tropomyosin (TPM2) gene to pig chromosome

Sherwood, J., Ciobanu, D. & Rothschild, M. F., May 2002, In : Journal of animal science. 80, 5, p. 1379-1380 2 p.

Research output: Contribution to journalArticle

Rapid communication: Physical and linkage mapping of the porcine calcitonin (CALC) gene

Neil, J. E., Vleck, S. E., Helm, J. M., Ciobanu, D. C. & Rothschild, M. F., Jun 2002, In : Journal of animal science. 80, 6, p. 1700-1701 2 p.

Research output: Contribution to journalArticle

2001
187 Citations (Scopus)

Evidence for new alleles in the protein kinase adenosine monophosphateactivated γ3-subunit gene associated with low glycogen content in pig skeletal muscle and improved meat quality

Ciobanu, D., Bastiaansen, J., Malek, M., Helm, J., Woollard, J., Plastow, G. & Rothschild, M. F., Dec 1 2001, In : Genetics. 159, 3, p. 1151-1162 12 p.

Research output: Contribution to journalArticle

Glycogen
Adenosine
Meat
Protein Kinases
Skeletal Muscle
24 Citations (Scopus)

Genetic variation in two conserved local Romanian pig breeds using type 1 DNA markers

Ciobanu, D. C., Day, A. E., Nagy, A., Wales, R., Rothschild, M. F. & Plastow, G. S., Jan 1 2001, In : Genetics Selection Evolution. 33, 4, p. 417-432 16 p.

Research output: Contribution to journalArticle

swine breeds
Genetic Markers
pig
genetic variation
Swine
2000
2 Citations (Scopus)

Rapid communication: Porcine vitamin D-25-hydroxylase maps to chromosome 5.

Ciobanu, D. C., Gill, R. K., Rothschild, M. F. & Bell, N. H., Dec 2000, In : Journal of animal science. 78, 12, p. 3193-3194 2 p.

Research output: Contribution to journalArticle