Eppley Institute for Cancer Research

Research Output 1967 2020

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Conference contribution
2019

Engineering hydrogel based cancer microenvironments for in vitro breast cancer cell culture and therapeutics screening

Shi, W., Kuss, M. A., Mohapatra, B., Mirza, S., Band, H., Band, V. & Duan, B., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumor Microenvironment
Hydrogel
Cell culture
Collagen
Hydrogels
2015
5 Citations (Scopus)

Qualitative and quantitative analysis of endocytic recycling

Reineke, J. B., Xie, S., Naslavsky, N. & Caplan, S. H., Jan 1 2015, Methods in Cell Biology: Sorting and Recycling Endosomes, 2015. Guo, W. (ed.). Academic Press Inc., p. 139-155 17 p. (Methods in Cell Biology; vol. 130).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Endocytosis
Clathrin
Cell Membrane
Intracellular Membranes
Eukaryotic Cells
2012
3 Citations (Scopus)

Using a level set to model multiple myeloma induced bone loss

Ayati, B. P., Graham, J. M. & Holstein, S. A., Dec 1 2012, ECCOMAS 2012 - European Congress on Computational Methods in Applied Sciences and Engineering, e-Book Full Papers. p. 3236-3248 13 p. (ECCOMAS 2012 - European Congress on Computational Methods in Applied Sciences and Engineering, e-Book Full Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multiple Models
Bone
Level Set
Bone Remodeling
Level-set Approach
2011
1 Citation (Scopus)

Breast cancer subtypes: Two decades of journey from cell culture to patients

Zhao, X., Gurumurthy, C. B., Malhotra, G., Mirza, S., Mohibi, S., Bele, A., Quinn, M. G., Band, H. & Band, V., Oct 14 2011, Human Cell Transformation: Role of Stem Cells and the Microenvironment. Rhim, J. & Kremer, R. (eds.). p. 135-144 10 p. (Advances in Experimental Medicine and Biology; vol. 720).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stem cells
Cell culture
Stem Cells
Cell Culture Techniques
Breast Neoplasms
16 Citations (Scopus)

Mucin O-glycan branching enzymes: Structure, function, and gene regulation

Cheng, P-W. & Radhakrishnan, P., Dec 19 2011, The Molecular Immunology of Complex Carbohydrates-3. Wu, A. (ed.). p. 465-492 28 p. (Advances in Experimental Medicine and Biology; vol. 705).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1,4-alpha-Glucan Branching Enzyme
Mucins
Gene expression
Polysaccharides
Genes
2010

Influence of time period and birth cohort effects on age-specific incidence rates of pancreatic and kidney cancer

Mdzinarishvili, T., Gleason, M. X. & Sherman, S., May 7 2010, Proceedings of the 43rd Annual Hawaii International Conference on System Sciences, HICSS-43. 5428372. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hazards
2009
59 Citations (Scopus)

Estrogen mediation of breast tumor formation involves estrogen receptor-dependent, as well as independent, genotoxic effects

Santen, R., Cavalieri, E., Rogan, E. G., Russo, J., Guttenplan, J., Ingle, J. & Yue, W., Feb 2009, Steroid Enzymes and Cancer. Blackwell Publishing Inc., p. 132-140 9 p. (Annals of the New York Academy of Sciences; vol. 1155).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Estrogen Receptors
Tumors
Estradiol
Estrogens
Breast Neoplasms
1 Citation (Scopus)

PCCR study for Italy: Meat consumption, preparation, and meat-derived carcinogens on the risk of sporadic pancreatic cancer

Haynatzki, G., Haynatzka, V., Ghiorzo, P. & Sherman, S., Apr 3 2009, Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS. 4755577. (Proceedings of the 42nd Annual Hawaii International Conference on System Sciences, HICSS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mutagens
Carcinogens
Meats
Logistics
2008

Activation of immune cells by polyanhydride adjuvants: Potential for novel cancer vaccines

Torres, M. P., Mallapragada, S. K., Jain, M., Batra, S. K. & Narasimhan, B., Dec 1 2008, 8th World Biomaterials Congress 2008. 1 p. (8th World Biomaterials Congress 2008; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polyanhydrides
Cancer Vaccines
Vaccines
Chemical activation

Introduction to advanced bioinformatics tools for translational research minitrack

Ali, H. H. & Sherman, S., Sep 16 2008, Proceedings of the 41st Annual Hawaii International Conference on System Sciences 2008, HICSS. 4438931. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bioinformatics
2007
6 Citations (Scopus)

A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3

Ohno, Y., Nishibori, E., Narumi, T., Koishi, T., Tahirov, T. H., Ago, H., Miyano, M., Himeno, R., Ebisuzaki, T., Sakata, M. & Taiji, M., Dec 1 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07. 56. (Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genetic algorithms
Proteins
X rays
Diffraction patterns
Molecules

A comparison of statistical approaches for genetic anticipation with application to pancreatic cancer

Havnatzki, G. R., Brand, R. E., Haynatzka, V. R., Lynch, H. T. & Sherman, S., Dec 1 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076630. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Statistical tests

Introduction to Mini-track: Advanced data management tools for biomedical informatics

Ali, H. H. & Sherman, S., Dec 1 2007, Proceedings of the 40th Annual Hawaii International Conference on System Sciences 2007, HICSS'07. 4076626. (Proceedings of the Annual Hawaii International Conference on System Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information management
2006
78 Citations (Scopus)

Catechol quinones of estrogens in the initiation of breast, prostate, and other human cancers: Keynote lecture

Cavalieri, E. & Rogan, E. G., Nov 2006, Estrogens and Human Diseases. Blackwell Publishing Inc., p. 286-301 16 p. (Annals of the New York Academy of Sciences; vol. 1089).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catechol Estrogens
Quinones
DNA Adducts
Prostate
Estrogens

New computational models for electrostatics of macromolecules in solvents

Dai, J., Tsukerman, I., Rubinstein, A. & Sherman, S., Nov 21 2006, 12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006. 1633152. (12th Biennial IEEE Conference on Electromagnetic Field Computation, CEFC 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Macromolecules
Electrostatics
Molecules
Boltzmann equation
Permittivity
2005
11 Citations (Scopus)

From context-dependence of mutations to molecular mechanisms of mutagenesis

Rogozin, I. B., Malyarchuk, B. A., Pavlov, Y. I. & Milanesi, L., Dec 1 2005, Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005. p. 409-420 12 p. (Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mutagenesis
DNA
Nucleotides
Repair
Mutagens

Identification of genes important in predicting the overall survival in patients with follicular lymphoma

Xiao, L., Fu, K., Iqbal, J., Chan, W. C. & Sherman, S., Dec 1 2005, Proceedings of the 2005 International Conference on Data Mining, DMIN'05. p. 181-186 6 p. (Proceedings of the 2005 International Conference on Data Mining, DMIN'05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Microarrays
Gene expression
Principal component analysis
2 Citations (Scopus)

Protein motif searching through similar enriched parikh vector identification

Huang, X., Ali, H. H., Sadanandam, A. & Singh, R. K., Dec 1 2005, Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering. p. 285-289 5 p. 1544482. (Proceedings - BIBE 2005: 5th IEEE Symposium on Bioinformatics and Bioengineering; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Protein folding
Ligands
Chemical analysis
2004

High-throughput computational and experimental biology strategy in identifying tumor expressing CAMs

Sadanandam, A., Varney, M. L. & Singh, R. K., Dec 1 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 450-451 2 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer aided manufacturing
Tumors
Throughput
Proteins
Peptides
1 Citation (Scopus)

SRPVS: A new motif searching algorithm for protein analysis

Huang, X., Ali, H. H., Sadanandam, A. & Singh, R. K., Dec 1 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 674-675 2 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Peptides
Amino acids
Chemical analysis
2003
1 Citation (Scopus)

Grid-layout visualization method in the microarray data analysis interactive graphics toolkit

Xiao, L., Shats, O. & Sherman, S., Jan 1 2003, Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003. Sprague, R. H. (ed.). Institute of Electrical and Electronics Engineers Inc., 1174805. (Proceedings of the 36th Annual Hawaii International Conference on System Sciences, HICSS 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microarrays
Visualization
Genes
Color
DNA
1993
15 Citations (Scopus)

Drug resistance and cancer

Morrow, C. S. & Cowan, K., Jan 1 1993, Advances in Experimental Medicine and Biology. Vol. 330. p. 287-305 19 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neoplastic Gene Expression Regulation
Neoplasm Proteins
Type II DNA Topoisomerase
Type I DNA Topoisomerase
Membrane Glycoproteins
1992
12 Citations (Scopus)

Imaging DNA molecules chemically bound to a mica surface (Invited Paper)

Lindsay, S. M., Lyubchenko, Y. L., Gall, A. A., Shlyakhtenko, L. S. & Harrington, R. E., Jan 1 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 84-90 7 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1639).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mica
mica
DNA
deoxyribonucleic acid
Imaging techniques
1985
34 Citations (Scopus)

ONE-ELECTRON OXIDATION IN AROMATIC HYDROCARBON CARCINOGENESIS.

Cavalieri, E. & Rogan, E. G., Dec 1 1985, ACS Symposium Series. Harvey, R. G. (ed.). ACS, p. 289-305 17 p. (ACS Symposium Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Aromatic Hydrocarbons
Polycyclic Aromatic Hydrocarbons
Oxidation
Electrons
Tumors
1983
8 Citations (Scopus)

ONE-ELECTRON OXIDATION OF AROMATIC HYDROCARBONS IN CHEMICAL AND BIOLOGICAL SYSTEMS.

Cavalieri, E. & Rogan, E., Dec 1 1983, Polynuclear Aromatic Hydrocarbons, International Symposium. Battelle Press, p. 1-26 26 p. (Polynuclear Aromatic Hydrocarbons, International Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Aromatic hydrocarbons
Biological systems
Oxidation
Electrons

SYNERGISTIC EFFECT OF THE ENVIRONMENTAL CONTAMINANTS CYCLOPENTA(cd)PYRENE AND BENZO(a)PYRENE IN MOUSE SKIN CARCINOGENICITY.

Rogan, E., Cavalieri, E., Munhall, A. & Salmasi, S., Dec 1 1983, Polynuclear Aromatic Hydrocarbons, International Symposium. Battelle Press, p. 1035-1046 12 p. (Polynuclear Aromatic Hydrocarbons, International Symposium).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pyrene
Skin
Impurities