College of Agricultural Sciences & Natural Resources

Research Output 1964 2020

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Review article
2005
102 Citations (Scopus)

Biogenesis of cytochrome c oxidase

Khalimonchuk, O. & Rödel, G., Dec 1 2005, In : Mitochondrion. 5, 6, p. 363-388 26 p.

Research output: Contribution to journalReview article

Electron Transport Complex IV
Oxidoreductases
Enzymes
Electron Transport
Mitochondria
18 Citations (Scopus)

Chlorovirus: A genus of Phycodnaviridae that infects certain chlorella-like green algae

Kang, M., Dunigan, D. D. & Van Etten, J. L., May 1 2005, In : Molecular Plant Pathology. 6, 3, p. 212-224 13 p.

Research output: Contribution to journalReview article

Chlorovirus
Phycodnaviridae
Chlorella
Chlorophyta
green alga
61 Citations (Scopus)

Human safety and genetically modified plants: A review of antibiotic resistance markers and future transformation selection technologies

Goldstein, D. A., Tinland, B., Gilbertson, L. A., Staub, J. M., Bannon, G. A., Goodman, R. E., McCoy, R. L. & Silvanovich, A., Jul 11 2005, In : Journal of Applied Microbiology. 99, 1, p. 7-23 17 p.

Research output: Contribution to journalReview article

Genetically Modified Plants
Microbial Drug Resistance
antibiotic resistance
Technology
Safety
72 Citations (Scopus)

Plant organellar protein targeting: A traffic plan still under construction

Mackenzie, S. A., Oct 1 2005, In : Trends in Cell Biology. 15, 10, p. 548-554 7 p.

Research output: Contribution to journalReview article

Plant Proteins
Protein Transport
Plastids
Proteins
Mitochondrial Proteins
107 Citations (Scopus)

Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III hop effector proteins in the plant pathogen Pseudomonas syringae

Lindeberg, M., Stavrinides, J., Chang, J. H., Alfano, J. R., Collmer, A., Dangl, J. L., Greenberg, J. T., Mansfield, J. W. & Guttman, D. S., Apr 1 2005, In : Molecular Plant-Microbe Interactions. 18, 4, p. 275-282 8 p.

Research output: Contribution to journalReview article

Pseudomonas syringae
Humulus
Plant Proteins
hops
Pathogens
24 Citations (Scopus)
Vegetable oils
Fatty acids
Metabolism
126 Citations (Scopus)

Uptake, localization, and noncarboxylase roles of biotin

Zempleni, J., Sep 5 2005, In : Annual Review of Nutrition. 25, p. 175-196 22 p.

Research output: Contribution to journalReview article

Biotin
Histones
Chromatin
Biotinylation
Biotinidase
2004
204 Citations (Scopus)

Alternative NAD(P)H dehydrogenases of plant mitochondria

Rasmusson, A. G., Soole, K. L. & Elthon, T. E., Jul 30 2004, In : Annual Review of Plant Biology. 55, p. 23-39 17 p.

Research output: Contribution to journalReview article

Mitochondria
NAD(P)H dehydrogenase (quinone)
NAD
Oxidoreductases
mitochondria
17 Citations (Scopus)

Application of the genome sequence to address concerns that Mycobacterium avium subspecies paratuberculosis might be a foodborne pathogen.

Bannantine, J. P., Barletta, R. G., Stabel, J. R., Paustian, M. L. & Kapur, V., Jan 1 2004, In : Foodborne pathogens and disease. 1, 1, p. 3-15 13 p.

Research output: Contribution to journalReview article

Mycobacterium avium subsp. paratuberculosis
Mycobacterium avium
paratuberculosis
food pathogens
Genome
41 Citations (Scopus)

Escherichia coli O157: H7: An update on intestinal colonization and virulence mechanisms

Moxley, R. A., Jun 2004, In : Animal Health Research Reviews. 5, 1, p. 15-33 19 p.

Research output: Contribution to journalReview article

Shiga toxin
Escherichia coli O157
virulence
hemolytic uremic syndrome
cattle
47 Citations (Scopus)

Evolution of bovine viral diarrhea virus vaccines

Kelling, C. L., Mar 1 2004, In : Veterinary Clinics of North America - Food Animal Practice. 20, 1, p. 115-129 15 p.

Research output: Contribution to journalReview article

Bovine Viral Diarrhea Viruses
Bovine viral diarrhea virus
Virus Diseases
Vaccines
vaccines
21 Citations (Scopus)

Food allergy and the food industry

Hefle, S. L. & Taylor, S. L., Jan 2004, In : Current allergy and asthma reports. 4, 1, p. 55-59 5 p.

Research output: Contribution to journalReview article

Food Hypersensitivity
Food Industry
Food
Allergens
Industry
62 Citations (Scopus)

Glycosyltransferases encoded by viruses

Markine-Goriaynoff, N., Gillet, L., Van Etten, J. L., Korres, H., Verma, N. & Vanderplasschen, A., Oct 1 2004, In : Journal of General Virology. 85, 10, p. 2741-2754 14 p.

Research output: Contribution to journalReview article

Glycosyltransferases
Viruses
Glycomics
Biological Phenomena
Virology
48 Citations (Scopus)

Identification of trace element-containing proteins in genomic databases

Gladyshev, V. N., Kryukov, G. V., Fomenko, D. E. & Hatfield, D. L., Jul 29 2004, In : Annual Review of Nutrition. 24, p. 579-596 18 p.

Research output: Contribution to journalReview article

Trace Elements
Databases
Computational Biology
Selenocysteine
Proteins

Inactivación de genes de Mycobacterium tuberculosis y su potencial utilidad en la prevención y el control de la tuberculosis.

Translated title of the contribution: Gene inactivation in Mycobacterium tuberculosis and its use in tuberculosis control and preventionChacón, O., Realpe, T., Barletta, R. G. & Robledo, J., Jun 2004, In : Biomédica : revista del Instituto Nacional de Salud. 24 Supp 1, p. 165-187 23 p.

Research output: Contribution to journalReview article

Gene Silencing
Mycobacterium tuberculosis
Tuberculosis
Genes
Genome
76 Citations (Scopus)

Information provision for allergic consumers - Where are we going with food allergen labelling?

Mills, E. N. C., Valovirta, E., Madsen, C., Taylor, S. L., Vieths, S., Anklam, E., Baumgartner, S., Koch, P., Crevel, R. W. R. & Frewer, L., Dec 1 2004, In : Allergy: European Journal of Allergy and Clinical Immunology. 59, 12, p. 1262-1268 7 p.

Research output: Contribution to journalReview article

Food Labeling
Allergens
Food
Food Hypersensitivity
Food Industry
192 Citations (Scopus)

Johne's disease, inflammatory bowel disease, and Mycobacterium paratuberculosis

Chacon, O., Bermudez, L. E. & Barletta, R. G., Dec 7 2004, In : Annual Review of Microbiology. 58, p. 329-363 35 p.

Research output: Contribution to journalReview article

Mycobacterium avium subsp. paratuberculosis
Paratuberculosis
Inflammatory Bowel Diseases
Mycobacterium avium
Ruminants
11 Citations (Scopus)

Management strategies to decrease calf death losses in beef herds

Larson, R. L., Tyler, J. W., Schultz, L. G., Tessman, R. K. & Hostetler, D. E., Jan 1 2004, In : Journal of the American Veterinary Medical Association. 224, 1, p. 42-48 7 p.

Research output: Contribution to journalReview article

Veterinary Abortion
Animal Nutritional Physiological Phenomena
Animal Husbandry
Cattle Diseases
animal physiology
118 Citations (Scopus)

Nematode Molecular Diagnostics: From bands to barcodes

Powers, T., Oct 14 2004, In : Annual Review of Phytopathology. 42, p. 367-383 17 p.

Research output: Contribution to journalReview article

barcoding
Nematoda
nucleotide sequences
DNA
quarantine
24 Citations (Scopus)

Osmolytes and Mechanisms Involved in Regulatory Volume Decrease under Conditions of Sudden or Gradual Osmolarity Decrease

Ordaz, B., Tuz, K., Ochoa, L. D., Lezama, R., Peña-Segura, C. & Franco, R., Jan 1 2004, In : Neurochemical Research. 29, 1, p. 65-72 8 p.

Research output: Contribution to journalReview article

Osmolar Concentration
Amino Acids
Chemical activation
Cell Size
Taurine
150 Citations (Scopus)

Polarity in filamentous fungi: Moving beyond the yeast paradigm

Harris, S. D. & Momany, M., Apr 1 2004, In : Fungal Genetics and Biology. 41, 4, p. 391-400 10 p.

Research output: Contribution to journalReview article

Fungi
Yeasts
Morphogenesis
Hyphae
Cytoskeleton
44 Citations (Scopus)

The application of X-ray, NMR, and molecular modeling in the design of MMP inhibitors

Rush, T. S. & Powers, R., Sep 15 2004, In : Current Topics in Medicinal Chemistry. 4, 12, p. 1311-1327 17 p.

Research output: Contribution to journalReview article

Molecular modeling
Matrix Metalloproteinase Inhibitors
Matrix Metalloproteinases
Arthritis
Nuclear magnetic resonance
29 Citations (Scopus)

The latency-related gene encoded by bovine herpesvirus 1 can suppress caspase 3 and caspase 9 cleavage during productive infection

Henderson, G., Perng, G. C., Nesburn, A. B., Wechsler, S. L. & Jones, C., Feb 1 2004, In : Journal of neurovirology. 10, 1, p. 64-70 7 p.

Research output: Contribution to journalReview article

Bovine Herpesvirus 1
Caspase 9
Caspase 3
Infection
Genes
533 Citations (Scopus)

Type III secretion system effector proteins: Double agents in bacterial disease and plant defense

Alfano, J. R. & Collmer, A., Oct 14 2004, In : Annual Review of Phytopathology. 42, p. 385-414 30 p.

Research output: Contribution to journalReview article

type III secretion system
proteins
pathogens
plasma membrane
protein-tyrosine-phosphatase
2003
448 Citations (Scopus)

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

Roberts, R. J., Belfort, M., Bestor, T., Bhagwat, A. S., Bickle, T. A., Bitinaite, J., Blumenthal, R. M., Degtyarev, S. K., Dryden, D. T. F., Dybvig, K., Firman, K., Gromova, E. S., Gumport, R. I., Halford, S. E., Hattman, S., Heitman, J., Hornby, D. P., Janulaitis, A., Jeltsch, A., Josephsen, J. & 27 others, Kiss, A., Klaenhammer, T. R., Kobayashi, I., Kong, H., Krüger, D. H., Lacks, S., Marinus, M. G., Miyahara, M., Morgan, R. D., Murray, N. E., Nagaraja, V., Piekarowicz, A., Pingoud, A., Raleigh, E., Rao, D. N., Reich, N., Repin, V. E., Selker, E. U., Shaw, P. C., Stein, D. C., Stoddard, B. L., Szybalski, W., Trautner, T. A., Van Etten, J. L., Vitor, J. M. B., Wilson, G. G. & Xu, S. Y., Apr 1 2003, In : Nucleic acids research. 31, 7, p. 1805-1812 8 p.

Research output: Contribution to journalReview article

Endonucleases
DNA Restriction Enzymes
Methyltransferases
Terminology
Microbial Genome
17 Citations (Scopus)

Cloning and initial characterization of an alternatively spliced transcript encoded by the bovine herpes virus 1 latency-related gene

Devireddy, L. R., Zhang, Y. & Jones, C. J., Dec 2003, In : Journal of neurovirology. 9, 6, p. 612-622 11 p.

Research output: Contribution to journalReview article

Virus Latency
Organism Cloning
Complementary DNA
Infection
Bovine Herpesvirus 1
15 Citations (Scopus)

Genomics perspective on disulfide bond formation

Fomenko, D. E. & Gladyshev, V. N., Aug 2003, In : Antioxidants and Redox Signaling. 5, 4, p. 397-402 6 p.

Research output: Contribution to journalReview article

Genomics
Disulfides
Protein Disulfide Reductase (Glutathione)
Isomerization
Sulfhydryl Compounds
203 Citations (Scopus)

Herpes simplex virus type 1 and bovine herpesvirus 1 latency

Jones, C., Jan 1 2003, In : Clinical Microbiology Reviews. 16, 1, p. 79-95 17 p.

Research output: Contribution to journalReview article

Bovine Herpesvirus 1
Human Herpesvirus 1
Trigeminal Ganglion
RNA
Infection
118 Citations (Scopus)

Industrial oils from transgenic plants

Jaworski, J. & Cahoon, E. B., Apr 2003, In : Current Opinion in Plant Biology. 6, 2, p. 178-184 7 p.

Research output: Contribution to journalReview article

industrial oils
transgenic plants
fatty acids
fatty acid metabolism
oilseeds
87 Citations (Scopus)

Microbial glutaminase: Biochemistry, molecular approaches and applications in the food industry

Nandakumar, R., Yoshimune, K., Wakayama, M. & Moriguchi, M., Sep 1 2003, In : Journal of Molecular Catalysis B: Enzymatic. 23, 2-6, p. 87-100 14 p.

Research output: Contribution to journalReview article

Glutaminase
Biochemistry
Food Industry
Enzymes
Amino acids
97 Citations (Scopus)

Regulation of gene expression by biotin (review)

Rodriguez-Melendez, R. & Zempleni, J., Dec 2003, In : Journal of Nutritional Biochemistry. 14, 12, p. 680-690 11 p.

Research output: Contribution to journalReview article

Gene Expression Regulation
Biotin
Gene expression
Gene Expression
Fetal Development
20 Citations (Scopus)

Stimulation of bovine herpesvirus-1 productive infection by the adenovirus E1A gene and a cell cycle regulatory gene, E2F-4

Geiser, V. & Jones, C., Apr 1 2003, In : Journal of General Virology. 84, 4, p. 929-938 10 p.

Research output: Contribution to journalReview article

Bovine Herpesvirus 1
Adenoviridae Infections
cdc Genes
Regulator Genes
Genes
13 Citations (Scopus)

Systematic status of Campydora Cobb, 1920 (Nematoda: Campydorina)

Mullin, P. G., Harris, T. S. & Powers, T. O., Dec 1 2003, In : Nematology. 5, 5, p. 699-711 13 p.

Research output: Contribution to journalReview article

Nematoda
ancestry
ribosomal DNA
uncertainty
phylogenetics
93 Citations (Scopus)

The role of Kaposi's sarcoma-associated herpesvirus/human herpesvirus-8 regulator of transcription activation (RTA) in control of gene expression

West, J. T. & Wood, C., Aug 11 2003, In : Oncogene. 22, 33 REV. ISS. 2, p. 5150-5163 14 p.

Research output: Contribution to journalReview article

Human Herpesvirus 8
Transcriptional Activation
Gene Expression
Immediate-Early Genes
Tropism
55 Citations (Scopus)

The safety of genetically modified foods produced through biotechnology

Hollingworth, R. M., Bjeldanes, L. F., Bolger, M., Kimber, I., Meade, B. J., Taylor, S. L. & Wallace, K. B., Jan 1 2003, In : Toxicological Sciences. 71, 1, p. 2-8 7 p.

Research output: Contribution to journalReview article

Genetically Modified Food
Biotechnology
Safety
Food
Animals
104 Citations (Scopus)

Towards integrated clinico-genomic models for personalized medicine: Combining gene expression signatures and clinical factors in breast cancer outcomes prediction

Nevins, J. R., Huang, E. S., Dressman, H., Pittman, J., Huang, A. T. & West, M., Oct 15 2003, In : Human Molecular Genetics. 12, REV. ISS. 2, p. R153-R157

Research output: Contribution to journalReview article

Precision Medicine
Transcriptome
Breast Neoplasms
Gene Expression
Oligonucleotide Array Sequence Analysis
148 Citations (Scopus)
Esterification
Fatty Acids
Enzymes
Proteins
Coenzyme A Ligases
143 Citations (Scopus)

Unusual Life Style of Giant Chlorella Viruses

Van Etten, J. L., Dec 1 2003, In : Annual Review of Genetics. 37, p. 153-195 43 p.

Research output: Contribution to journalReview article

Chlorella
Life Style
Viruses
Introns
Proteins
2002

Approaches to the safety assessment of novel foods and novel gene products

Taylor, S. L., May 1 2002, In : Comments on Toxicology. 8, 3, p. 241-250 10 p.

Research output: Contribution to journalReview article

Safety
Food
Genes

Assessment of the allergenicity of foods produced through agricultural biotechnology

Taylor, S. L., Dec 1 2002, In : ACS Symposium Series. 829, p. 205-216 12 p.

Research output: Contribution to journalReview article

Biotechnology
72 Citations (Scopus)

Bean pod mottle virus: A threat to U.S. soybean production

Giesler, L. J., Ghabrial, S. A., Hunt, T. E. & Hill, J. H., Dec 1 2002, In : Plant disease. 86, 12, p. 1280-1289 10 p.

Research output: Contribution to journalReview article

Open Access
Bean pod mottle virus
soybeans
16 Citations (Scopus)

Bioinformatic methods for identifying known or potential allergens in the safety assessment of genetically modified crops

Goodman, R. E., Silvanovich, A., Hileman, R. E., Bannon, G. A., Rice, E. A. & Astwood, J. D., May 1 2002, In : Comments on Toxicology. 8, 3, p. 251-269 19 p.

Research output: Contribution to journalReview article

Food Safety
Biotechnology
Computational Biology
Allergens
Hypersensitivity
33 Citations (Scopus)

Digestive stability in the context of assessing the potential allergenicity of food proteins

Bannon, G. A., Goodman, R. E., Leach, J. N., Rice, E., Fuchs, R. L. & Astwood, J. D., May 1 2002, In : Comments on Toxicology. 8, 3, p. 271-285 15 p.

Research output: Contribution to journalReview article

Food Hypersensitivity
Pepsin A
Immunoglobulin E
Food
Proteins
242 Citations (Scopus)

Evaluation of the health aspects of methyl paraben: A review of the published literature

Soni, M. G., Taylor, S. L., Greenberg, N. A. & Burdock, G. A., Oct 1 2002, In : Food and Chemical Toxicology. 40, 10, p. 1335-1373 39 p.

Research output: Contribution to journalReview article

Parabens
skin (animal)
no observed adverse effect level
4-hydroxybenzoic acid
Health
26 Citations (Scopus)

Genetically engineered foods: Implications for food allergy

Taylor, S. L. & Hefle, S. L., Jan 1 2002, In : Current opinion in allergy and clinical immunology. 2, 3, p. 249-252 4 p.

Research output: Contribution to journalReview article

Food Hypersensitivity
Biotechnology
Food
Food Supply
Soybeans
182 Citations (Scopus)

Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors

Collmer, A., Lindeberg, M., Petnicki-Ocwieja, T., Schneider, D. J. & Alfano, J. R., Oct 1 2002, In : Trends in Microbiology. 10, 10, p. 462-469 8 p.

Research output: Contribution to journalReview article

Pseudomonas syringae
Lycopersicon esculentum
Virulence
Genome
Arabidopsis
23 Citations (Scopus)

How much food is too much? Threshold doses for allergenic foods.

Hefle, S. L. & Taylor, S. L., Jan 2002, In : Current allergy and asthma reports. 2, 1, p. 63-66 4 p.

Research output: Contribution to journalReview article

Food
Immunoglobulin E
Hypersensitivity
Eating
Research
17 Citations (Scopus)

Influence of protein tyrosine kinases on cell volume change-induced taurine release

Pasantes-Morales, H. & Franco, R., Apr 1 2002, In : Cerebellum. 1, 2, p. 103-109 7 p.

Research output: Contribution to journalReview article

Taurine
Cell Size
Protein-Tyrosine Kinases
Phosphotransferases
Cytoskeleton
57 Citations (Scopus)

Mechanisms counteracting swelling in brain cells during hyponatremia

Pasantes-Morales, H., Franco, R., Ordaz, B. & Ochoa, L. D., Jun 4 2002, In : Archives of Medical Research. 33, 3, p. 237-244 8 p.

Research output: Contribution to journalReview article

Hyponatremia
Brain Edema
Methylamines
Chloride Channels
1-Phosphatidylinositol 4-Kinase
71 Citations (Scopus)

Multiple signal transduction pathways regulate ovarian steroidogenesis

Wood, J. R. & Strauss, J. F., Jul 8 2002, In : Reviews in Endocrine and Metabolic Disorders. 3, 1, p. 33-46 14 p.

Research output: Contribution to journalReview article

FSH Receptors
LH Receptors
Follicle Stimulating Hormone
Somatomedins
Luteinizing Hormone