College of Agricultural Sciences & Natural Resources

Research Output 1964 2019

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2019

Acclimation of consortium of micro-algae help removal of organic pollutants from meat processing wastewater

Hu, X., Meneses, Y. E., Stratton, J. & Wang, B., Mar 20 2019, In : Journal of Cleaner Production. 214, p. 95-102 8 p.

Research output: Contribution to journalArticle

microalga
Meats
Organic pollutants
Chemical oxygen demand
Algae
Magnaporthe
Magnaporthe oryzae
appressoria
germ tube
Morphogenesis

A genome-wide association study for gestation length in swine

See, G. M., Trenhaile-Grannemann, M. D., Spangler, M. L., Ciobanu, D. C. & Mote, B. E., Jan 1 2019, In : Animal Genetics.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Swine
pregnancy
piglets
Pregnancy

Allyl isothiocyanate regulates lysine acetylation and methylation marks in an experimental model of malignant melanoma

Mitsiogianni, M., Mantso, T., Trafalis, D. T., Vasantha Rupasinghe, H. P., Zoumpourlis, V., Franco-Cruz, R., Botaitis, S., Pappa, A. & Panayiotidis, M. I., Jan 1 2019, In : European Journal of Nutrition.

Research output: Contribution to journalArticle

Acetylation
Histone Deacetylases
Methylation
Lysine
Melanoma

An Information Theoretic Framework to Analyze Molecular Communication Systems Based on Statistical Mechanics

Akyildiz, I. F., Pierobon, M. & Balasubramaniam, S., Jul 1 2019, In : Proceedings of the IEEE. 107, 7, p. 1230-1255 26 p., 8768452.

Research output: Contribution to journalArticle

Statistical mechanics
Communication systems
Communication
Channel capacity
Molecules

A novel functional role of nickel in sperm motility and eukaryotic cell growth

Bian, J., Shi, X., Li, Q., Zhao, M., Wang, L., Lee, J., Tao, M. & Wu, X., Jul 1 2019, In : Journal of Trace Elements in Medicine and Biology. 54, p. 142-149 8 p.

Research output: Contribution to journalArticle

Sperm Motility
Cell growth
Eukaryotic Cells
Nickel
Semen
3 Citations (Scopus)

A Plant Immune Receptor Degraded by Selective Autophagy

Yang, F., Kimberlin, A. N., Elowsky, C. G., Liu, Y., Gonzalez-Solis, A., Cahoon, E. B. & Alfano, J. R., Jan 7 2019, In : Molecular Plant. 12, 1, p. 113-123 11 p.

Research output: Contribution to journalArticle

autophagy
Autophagy
Orosomucoid
Arabidopsis
Pseudomonas syringae

A poxvirus pseudokinase represses viral DNA replication via a pathway antagonized by its paralog kinase

Olson, A. T., Wang, Z., Rico, A. B. & Wiebe, M. S., Feb 1 2019, In : PLoS pathogens. 15, 2, e1007608.

Research output: Contribution to journalArticle

Open Access
Poxviridae
Viral DNA
DNA Replication
Phosphotransferases
Viruses

A quantitative microbial risk assessment model of Campylobacter in broiler chickens: Evaluating processing interventions

Dogan, O. B., Clarke, J., Mattos, F. & Wang, B., Jun 1 2019, In : Food Control. 100, p. 97-110 14 p.

Research output: Contribution to journalArticle

microbiological risk assessment
quantitative risk assessment
Campylobacter
Chickens
broiler chickens

A small viral potassium ion channel with an inherent inward rectification

Eckert, D., Schulze, T., Stahl, J., Rauh, O., Van Etten, J. L., Hertel, B., Schroeder, I., Moroni, A. & Thiel, G., Dec 1 2019, In : Channels (Austin, Tex.). 13, 1, p. 124-135 12 p.

Research output: Contribution to journalArticle

Open Access
Potassium Channels
Point Mutation
Phycodnaviridae
Lipid bilayers
HEK293 Cells

Blocking HIV-1 infection by chromosomal integrative expression of human CD4 on the surface of lactobacillus acidophilus ATCC 4356

Wei, W., Wiggins, J., Hu, D., Vrbanac, V., Bowder, D., Mellon, M., Tager, A., Sodroski, J. & Xiang, S-H., Jan 1 2019, In : Journal of virology. 93, 8, Y.

Research output: Contribution to journalArticle

Lactobacillus acidophilus
Virus Diseases
Human immunodeficiency virus 1
HIV-1
Lactobacillus
2 Citations (Scopus)
Dust
Macrophages
Milk
Nutrition
Polarization

Bovine milk extracellular vesicles (EVs) modification elicits skeletal muscle growth in rats

Parry, H. A., Brooks Mobley, C., Mumford, P. W., Romero, M. A., Haun, C. T., Zhang, Y., Roberson, P. A., Zempleni, J., Ferrando, A. A., Vechetti, I. J., McCarthy, J. J., Young, K. C., Roberts, M. D. & Kavazis, A. N., Jan 1 2019, In : Frontiers in Physiology. 10, MAR, 436.

Research output: Contribution to journalArticle

Open Access
Milk
Skeletal Muscle
Growth
Diet
Sonication

Candida albicans quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in Staphylococcus aureus

Vila, T., Kong, E. F., Ibrahim, A., Piepenbrink, K. H., Shetty, A. C., McCracken, C., Bruno, V. & Jabra-Rizk, M. A., Jan 1 2019, In : Virulence. 10, 1, p. 625-642 18 p.

Research output: Contribution to journalArticle

Open Access
Farnesol
Quorum Sensing
Candida albicans
Sulfhydryl Compounds
Staphylococcus aureus

Chloroviruses lure hosts through long-distance chemical signaling

Dunigan, D. D., Al-Sammak, M., Al-Ameeli, Z., Agarkova, I. V., DeLong, J. P. & Van Etten, J. L., Jan 1 2019, In : Journal of virology. 93, 7, e01688.

Research output: Contribution to journalArticle

Chlorovirus
Viruses
viruses
Population Dynamics
Planets
Ghrelin
Ethanol
Alcohols
Insulin
Nonesterified Fatty Acids

Coding sequences of sarcoplasmic reticulum calcium ATPase regulatory peptides and expression of calcium regulatory genes in recurrent exertional rhabdomyolysis

Valberg, S. J., Soave, K., Williams, Z. J., Perumbakkam, S., Schott, M., Finno, C. J., Petersen, J. L., Fenger, C., Autry, J. M. & Thomas, D. D., Jan 1 2019, In : Journal of Veterinary Internal Medicine.

Research output: Contribution to journalArticle

Sarcoplasmic Reticulum Calcium-Transporting ATPases
rhabdomyolysis
Rhabdomyolysis
sarcoplasmic reticulum
Ca2-transporting ATPase

Cognitive aids and food choice: Real-time calorie counters reduce calories ordered and correct biases in calorie estimates

Gustafson, C. R. & Zeballos, E., Oct 1 2019, In : Appetite. 141, 104320.

Research output: Contribution to journalArticle

Food
Technology
Social Adjustment
Access to Information
Meals

Comparison of recovery and immunochemical detection of peanut proteins from differentially roasted peanut flour using ELISA

Jayasena, S., Koppelman, S. J., Nayak, B., Taylor, S. L. & Baumert, J. L., Sep 15 2019, In : Food Chemistry. 292, p. 32-38 7 p.

Research output: Contribution to journalArticle

peanut flour
peanut protein
Flour
peanuts
Enzyme-Linked Immunosorbent Assay

Cryopreservation of Paramecium bursaria Chlorella Virus-1 during an active infection cycle of its host

Coy, S. R., Alsante, A. N., Van Etten, J. L. & Wilhelm, S. W., Mar 1 2019, In : PloS one. 14, 3, e0211755.

Research output: Contribution to journalArticle

Open Access
Paramecium bursaria Chlorella virus 1
Paramecium
Chlorella
Cryopreservation
Viruses

Dynamic and structural differences between heme oxygenase-1 and -2 are due to differences in their C-terminal regions

Kochert, B. A., Fleischhacker, A. S., Wales, T. E., Becker, D. F., Engen, J. R. & Ragsdale, S. W., Jan 1 2019, In : Journal of Biological Chemistry. 294, 20, p. 8259-8272 14 p.

Research output: Contribution to journalArticle

Heme Oxygenase-1
Heme
Heme Oxygenase (Decyclizing)
Catalytic Domain
Anchors

Effect of nanoformulated copper/zinc superoxide dismutase on chronic ethanol-induced alterations in liver and adipose tissue

Natarajan, G., Perriotte-Olson, C., Casey, C. A., Donohue, T., Talmon, G. A., Harris, E. N., Kabanov, A. V. & Viswanathan, S., Sep 1 2019, In : Alcohol. 79, p. 71-79 9 p.

Research output: Contribution to journalArticle

Liver
Superoxide Dismutase
Adipose Tissue
Zinc
Copper
1 Citation (Scopus)
whole wheat flour
drying temperature
Flour
Germination
dough
2 Citations (Scopus)

Enhancing the Bioaccessibility of Phytosterols Using Nanoporous Corn and Wheat Starch Bioaerogels

Ubeyitogullari, A., Moreau, R. F., Rose, D. J., Zhang, J. & Ciftci, O. N., Jan 1 2019, In : European Journal of Lipid Science and Technology. 121, 1, 1700229.

Research output: Contribution to journalArticle

Phytosterols
wheat starch
Aerogels
phytosterols
corn starch

Evidence for a de novo, dominant germ-line mutation causative of osteogenesis imperfecta in two Red Angus calves

Petersen, J. L., Tietze, S. M., Burrack, R. M. & Steffen, D. J., Apr 1 2019, In : Mammalian Genome. 30, 3-4, p. 81-87 7 p.

Research output: Contribution to journalArticle

Osteogenesis Imperfecta
Germ-Line Mutation
Collagen Type I
Germ Cells
Glycine

Exosome-like Nanoparticles from Ginger Rhizomes Inhibited NLRP3 Inflammasome Activation

Chen, X., Zhou, Y. & Yu, J., Jun 3 2019, In : Molecular Pharmaceutics. 16, 6, p. 2690-2699 10 p.

Research output: Contribution to journalArticle

Inflammasomes
Exosomes
Ginger
Rhizome
Nanoparticles

Experimental Evidence for Adaptation to Species-Specific Gut Microbiota in House Mice

Moeller, A. H., Gomes-Neto, J. C., Mantz, S., Kittana, H., Segura Munoz, R. R., Schmaltz, R. J., Ramer-Tait, A. & Nachman, M. W., Jul 10 2019, In : mSphere. 4, 4

Research output: Contribution to journalArticle

Open Access
Gastrointestinal Microbiome
Transplantation
Metagenome
Macrophage Inflammatory Proteins
Growth
1 Citation (Scopus)

Experimental studies on zeta potential of flocculants for harvesting of algae

Pandey, A., Pathak, V. V., Kothari, R., Black, P. N. & Tyagi, V. V., Feb 1 2019, In : Journal of Environmental Management. 231, p. 562-569 8 p.

Research output: Contribution to journalArticle

Zeta potential
Algae
experimental study
alga
Calcium carbonate

Expression of the Arabidopsis WRINKLED 1 transcription factor leads to higher accumulation of palmitate in soybean seed

Vogel, P. A., Bayon de Noyer, S., Park, H., Nguyen, H., Hou, L., Changa, T., Khang, H. L., Ciftci, O. N., Wang, T., Cahoon, E. B. & Clemente, T. E., Jul 1 2019, In : Plant Biotechnology Journal. 17, 7, p. 1369-1379 11 p.

Research output: Contribution to journalArticle

Open Access
Palmitates
palmitates
Soybeans
Arabidopsis
Seeds
2 Citations (Scopus)

Extraction of astaxanthin from engineered Camelina sativa seed using ethanol-modified supercritical carbon dioxide

Xie, L., Cahoon, E. B., Zhang, Y. & Ciftci, O. N., Jan 1 2019, In : Journal of Supercritical Fluids. 143, p. 171-178 8 p.

Research output: Contribution to journalArticle

Carbon Dioxide
Seed
carbon dioxide
seeds
Carbon dioxide
7 Citations (Scopus)

Fatty acid transport protein 2 reprograms neutrophils in cancer

Veglia, F., Tyurin, V. A., Blasi, M., De Leo, A., Kossenkov, A. V., Donthireddy, L., To, T. K. J., Schug, Z., Basu, S., Wang, F., Ricciotti, E., DiRusso, C. C., Murphy, M. E., Vonderheide, R. H., Lieberman, P. M., Mulligan, C., Nam, B., Hockstein, N., Masters, G., Guarino, M. & 5 others, Lin, C., Nefedova, Y., Black, P. N., Kagan, V. E. & Gabrilovich, D. I., May 2 2019, In : Nature. 569, 7754, p. 73-78 6 p.

Research output: Contribution to journalArticle

Fatty Acid Transport Proteins
Neutrophils
Fatty Acids
Neoplasms
STAT5 Transcription Factor

Field performance of terpene-producing Camelina sativa

Augustin, J. M., Brock, J. R., Augustin, M. M., Wellinghoff, R. L., Shipp, M., Higashi, Y., Kumssa, T. T., Cahoon, E. B. & Kutchan, T. M., Sep 15 2019, In : Industrial Crops and Products. 136, p. 50-58 9 p.

Research output: Contribution to journalArticle

Camelina sativa
terpenoids
Camelina
greenhouses
seed oils

Focus issue editorial: Biotic stress

Jin, H., Mitchum, M., Panstruga, R. & Stone, J. M., Apr 1 2019, In : Plant Physiology. 179, 4, p. 1193-1195 3 p.

Research output: Contribution to journalArticle

Open Access
biotic stress

Functional Evolution of Proteins

Catazaro, J., Caprez, A., Swanson, D. R. & Powers, R., Jan 1 2019, In : Proteins: Structure, Function and Bioinformatics.

Research output: Contribution to journalArticle

Catalytic Domain
Proteins
Databases
Gene Duplication
Molecular Evolution

Genetic diversity and relationships among native Japanese horse breeds, the Japanese Thoroughbred and horses outside of Japan using genome-wide SNP data

Tozaki, T., Kikuchi, M., Kakoi, H., Hirota, K., Nagata, S., Yamashita, D., Ohnuma, T., Takasu, M., Kobayashi, I., Hobo, S., Manglai, D. & Petersen, J. L., Jan 1 2019, In : Animal Genetics.

Research output: Contribution to journalArticle

horse breeds
genetic relationships
Horses
Single Nucleotide Polymorphism
Japan

Genomic Bayesian confirmatory factor analysis and Bayesian network to characterize a wide spectrum of rice phenotypes

Yu, H., Campbell, M. T., Zhang, Q., Walia, H. & Morota, G., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 6, p. 1975-1986 12 p.

Research output: Contribution to journalArticle

Open Access
Statistical Factor Analysis
Phenotype
Breeding
Taboo
Single Nucleotide Polymorphism

Gut microbiota dependent anti-tumor immunity restricts melanoma growth in Rnf5 −/− mice

Li, Y., Tinoco, R., Elmén, L., Segota, I., Xian, Y., Fujita, Y., Sahu, A., Zarecki, R., Marie, K., Feng, Y., Khateb, A., Frederick, D. T., Ashkenazi, S. K., Kim, H., Perez, E. G., Day, C. P., Segura Muñoz, R. S., Schmaltz, R., Yooseph, S., Tam, M. A. & 22 others, Zhang, T., Avitan-Hersh, E., Tzur, L., Roizman, S., Boyango, I., Bar-Sela, G., Orian, A., Kaufman, R. J., Bosenberg, M., Goding, C. R., Baaten, B., Levesque, M. P., Dummer, R., Brown, K., Merlino, G., Ruppin, E., Flaherty, K., Ramer-Tait, A., Long, T., Peterson, S. N., Bradley, L. M. & Ronai, Z. A., Dec 1 2019, In : Nature communications. 10, 1, 1492.

Research output: Contribution to journalArticle

Open Access
immunity
mice
Tumors
Immunity
Melanoma

Hydrodistillation Extraction Kinetics Regression Models for Essential Oil Yield and Composition in Juniperus virginiana, J. Excelsa, and J. Sabina

Semerdjieva, I. B., Shiwakoti, S., Cantrell, C. L., Zheljazkov, V. D., Astatkie, T., Schlegel, V. L. & Radoukova, T., Jan 1 2019, In : Molecules. 24, 5, 986.

Research output: Contribution to journalArticle

Open Access
Juniperus
Volatile Oils
regression analysis
Antioxidants
oils

Identification of age- and gender-associated long noncoding RNAs in the human brain with Alzheimer's disease

Cao, M., Li, H., Zhao, J., Cui, J. & Hu, G., Sep 1 2019, In : Neurobiology of Aging. 81, p. 116-126 11 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
Alzheimer Disease
Brain
Synaptic Vesicles
Brain Diseases

Impact of wheat bran physical properties and chemical composition on whole grain flour mixing and baking properties

Navrotskyi, S., Guo, G., Baenziger, P. S., Xu, L. & Rose, D. J., Sep 1 2019, In : Journal of Cereal Science. 89, 102790.

Research output: Contribution to journalArticle

Ashes
whole grain flour
Dietary Fiber
bran
Flour

Improved extraction of peanut residues from a wheat flour matrix for immunochemical detection

Jayasena, S., Wijeratne, S. S. K., Taylor, S. L. & Baumert, J. L., Apr 25 2019, In : Food Chemistry. 278, p. 832-840 9 p.

Research output: Contribution to journalArticle

Flour
wheat flour
Triticum
peanuts
Buffers

Increasing the concentration of linolenic acid in diets fed to Jersey cows in late lactation does not affect methane production

Judy, J. V., Bachman, G. C., Brown-Brandl, T. M., Fernando, S. C., Hales, K. E., Harvatine, K. J., Miller, P. S. & Kononoff, P. J., Jan 1 2019, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

alpha-Linolenic Acid
late lactation
Methane
Jersey
methane production
4 Citations (Scopus)

Influence of oxidative damage to proteins on meat tenderness using a proteomics approach

Malheiros, J. M., Braga, C. P., Grove, R. A., Ribeiro, F. A., Calkins, C. R., Adamec, J. & Chardulo, L. A. L., Feb 1 2019, In : Meat Science. 148, p. 64-71 8 p.

Research output: Contribution to journalArticle

meat tenderness
Proteomics
proteomics
Meat
meat

Interventions Targeting Deep Tissue Lymph Nodes May Not Effectively Reduce the Risk of Salmonellosis from Ground Pork Consumption: A Quantitative Microbial Risk Assessment

Zhang, Y., O'Connor, A. M., Wang, C., Dickson, J. S., Hurd, H. S. & Wang, B., Jan 1 2019, In : Risk Analysis.

Research output: Contribution to journalArticle

Open Access
Salmonella Infections
Risk assessment
Lymph Nodes
Tissue
Salmonella

Investigation of congestive heart failure in beef cattle in a feedyard at a moderate altitude in western Nebraska

Moxley, R. A., Smith, D. R., Grotelueschen, D. M., Edwards, T. & Steffen, D. J., Jul 1 2019, In : Journal of Veterinary Diagnostic Investigation. 31, 4, p. 509-522 14 p.

Research output: Contribution to journalArticle

heart failure
fibrosis
feedlots
beef cattle
Heart Ventricles

In Vitro Bioaccessibility of Low-Crystallinity Phytosterol Nanoparticles Generated Using Nanoporous Starch Bioaerogels

Ubeyitogullari, A., Moreau, R. F., Rose, D. J. & Ciftci, O. N., Jul 1 2019, In : Journal of Food Science. 84, 7, p. 1812-1819 8 p.

Research output: Contribution to journalArticle

Phytosterols
phytosterols
nanoparticles
Starch
Nanoparticles

Kaposi's sarcoma-associated herpesvirus seropositivity is associated with type 2 diabetes mellitus: A case–control study in Xinjiang, China

Cui, M., Fang, Q., Zheng, J., Shu, Z., Chen, Y., Fan, Y., Zhao, J., Wood, C., Zhang, T. & Zeng, Y., Mar 1 2019, In : International Journal of Infectious Diseases. 80, p. 73-79 7 p.

Research output: Contribution to journalArticle

Open Access
Human Herpesvirus 8
Type 2 Diabetes Mellitus
China
Herpesviridae Infections
Confidence Intervals

Leveraging Breeding Values Obtained from Random Regression Models for Genetic Inference of Longitudinal Traits

Campbell, M., Momen, M., Walia, H. & Morota, G., Jun 1 2019, In : The plant genome. 12, 2

Research output: Contribution to journalArticle

Open Access
Genetic Models
breeding value
Breeding
trajectories
Growth
3 Citations (Scopus)

LncRNA Meg3 protects endothelial function by regulating the DNA damage response

Ali, M. S. S. H., Cheng, X., Moran, M., Haemmig, S., Naldrett, M. J., Alvarez, S., Feinberg, M. W. & Sun, X., Jan 1 2019, In : Nucleic Acids Research. 47, 3

Research output: Contribution to journalArticle

Open Access
Polypyrimidine Tract-Binding Protein
DNA Damage
p53 Genes
Endothelial Cells
Long Noncoding RNA

Longitudinal quantification of adenovirus neutralizing responses in Zambian mother-infant pairs: Impact of HIV-1 infection and its treatment

Privatt, S. R., Bullard, B. L., Weaver, E. A., Wood, C. & West, J. T., Aug 23 2019, In : Vaccine. 37, 36, p. 5177-5184 8 p.

Research output: Contribution to journalArticle

Adenoviridae
Human immunodeficiency virus 1
neutralization
HIV Infections
HIV-1