College of Agricultural Sciences & Natural Resources

Research Output 1964 2020

2020

Evaluation of N-terminal labeling mass spectrometry for characterization of partially hydrolyzed gluten proteins

Cao, W., Baumert, J. L. & Downs, M. L., Jan 6 2020, In : Journal of Proteomics. 210, 103538.

Research output: Contribution to journalArticle

Glutens
Labeling
Mass spectrometry
Mass Spectrometry
Amines

Metabolic engineering of soybean seeds for enhanced vitamin E tocochromanol content and effects on oil antioxidant properties in polyunsaturated fatty acid-rich germplasm

Konda, A. R., Nazarenus, T. J., Nguyen, H., Yang, J., Gelli, M., Swenson, S., Shipp, J. M., Schmidt, M. A., Cahoon, R. E., Ciftci, O. N., Zhang, C., Clemente, T. E. & Cahoon, E. B., Jan 2020, In : Metabolic Engineering. 57, p. 63-73 11 p.

Research output: Contribution to journalArticle

Polyunsaturated fatty acids
Metabolic engineering
Metabolic Engineering
Vitamins
Antioxidants

Reduction in pathogenic load of wheat by tempering with saline organic acid solutions at different seasonal temperatures

Sabillón, L., Stratton, J., Rose, D. & Bianchini, A., Jan 16 2020, In : International Journal of Food Microbiology. 313, 108381.

Research output: Contribution to journalArticle

tempering
Triticum
organic acids and salts
wheat
Temperature
2019

Acclimation of consortium of micro-algae help removal of organic pollutants from meat processing wastewater

Hu, X., Meneses, Y. E., Stratton, J. & Wang, B., Mar 20 2019, In : Journal of Cleaner Production. 214, p. 95-102 8 p.

Research output: Contribution to journalArticle

microalga
Meats
Organic pollutants
Chemical oxygen demand
Algae

A double humanized blt-mice model featuring a stable human-like gut microbiome and human immune system

Daharsh, L., Zhang, J., Ramer-Tait, A. & Li, Q., Aug 2019, In : Journal of Visualized Experiments. 2019, 150, e59773.

Research output: Contribution to journalArticle

Immune system
Immune System
Transplants
Animals
Antibiotics
1 Citation (Scopus)
Magnaporthe
Magnaporthe oryzae
appressoria
germ tube
Morphogenesis
1 Citation (Scopus)

A General Hybrid Clustering Technique

Amiri, S., Clarke, B. S., Clarke, J. L. & Koepke, H., Jul 3 2019, In : Journal of Computational and Graphical Statistics. 28, 3, p. 540-551 12 p.

Research output: Contribution to journalArticle

Open Access
Clustering
Dendrogram
Number of Clusters
Hamming Distance
K-means Clustering

A genome-wide association study for gestation length in swine

See, G. M., Trenhaile-Grannemann, M. D., Spangler, M. L., Ciobanu, D. C. & Mote, B. E., Oct 1 2019, In : Animal genetics. 50, 5, p. 539-542 4 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Swine
pregnancy
piglets
Pregnancy
1 Citation (Scopus)

Allyl isothiocyanate regulates lysine acetylation and methylation marks in an experimental model of malignant melanoma

Mitsiogianni, M., Mantso, T., Trafalis, D. T., Vasantha Rupasinghe, H. P., Zoumpourlis, V., Franco, R., Botaitis, S., Pappa, A. & Panayiotidis, M. I., Jan 1 2019, In : European Journal of Nutrition.

Research output: Contribution to journalArticle

Acetylation
Histone Deacetylases
Methylation
Lysine
Melanoma

An Information Theoretic Framework to Analyze Molecular Communication Systems Based on Statistical Mechanics

Akyildiz, I. F., Pierobon, M. & Balasubramaniam, S., Jul 2019, In : Proceedings of the IEEE. 107, 7, p. 1230-1255 26 p., 8768452.

Research output: Contribution to journalArticle

Statistical mechanics
Communication systems
Communication
Channel capacity
Molecules

An in vitro enrichment strategy for formulating synergistic synbiotics

Kok, C. R., Quintero, D. F. G., Niyirora, C., Rose, D., Li, A. & Hutkins, R., Aug 1 2019, In : Applied and environmental microbiology. 85, 16, e01073-19.

Research output: Contribution to journalArticle

Synbiotics
xylooligosaccharides
Prebiotics
probiotics
dietary supplements

A novel functional role of nickel in sperm motility and eukaryotic cell growth

Bian, J., Shi, X., Li, Q., Zhao, M., Wang, L., Lee, J., Tao, M. & Wu, X., Jul 2019, In : Journal of Trace Elements in Medicine and Biology. 54, p. 142-149 8 p.

Research output: Contribution to journalArticle

Sperm Motility
Cell growth
Eukaryotic Cells
Nickel
Semen

Antibiotics and host-tailored probiotics similarly modulate effects on the developing avian microbiome, mycobiome, and host gene expression

Ward, T. L., Weber, B. P., Mendoza, K. M., Danzeisen, J. L., Llop, K., Lang, K., Clayton, J. B., Grace, E., Brannon, J., Radovic, I., Beauclaire, M., Heisel, T. J., Knights, D., Cardona, C., Kogut, M., Johnson, C., Noll, S. L., Arsenault, R., Reed, K. M. & Johnson, T. J., Jan 1 2019, In : mBio. 10, 5, e02171-19.

Research output: Contribution to journalArticle

Open Access
Microbiota
Probiotics
Anti-Bacterial Agents
Gene Expression
Poultry

A Panel of Protein Kinase Chemosensors Distinguishes Different Types of Fatty Liver Disease

Beck, J. R., Cabral, F., Rasineni, K., Casey, C. A., Harris, E. N. & Stains, C. I., Sep 17 2019, In : Biochemistry. 58, 37, p. 3911-3917 7 p.

Research output: Contribution to journalArticle

Fatty Liver
Liver
Protein Kinases
Liver Diseases
Nutrition
5 Citations (Scopus)

A Plant Immune Receptor Degraded by Selective Autophagy

Yang, F., Kimberlin, A. N., Elowsky, C. G., Liu, Y., Gonzalez-Solis, A., Cahoon, E. B. & Alfano, J. R., Jan 7 2019, In : Molecular Plant. 12, 1, p. 113-123 11 p.

Research output: Contribution to journalArticle

autophagy
Autophagy
Orosomucoid
Arabidopsis
Pseudomonas syringae
2 Citations (Scopus)

A poxvirus pseudokinase represses viral DNA replication via a pathway antagonized by its paralog kinase

Olson, A. T., Wang, Z., Rico, A. B. & Wiebe, M. S., Feb 2019, In : PLoS pathogens. 15, 2, e1007608.

Research output: Contribution to journalArticle

Open Access
Poxviridae
Viral DNA
DNA Replication
Phosphotransferases
Viruses

Applying molecular communication theory to multi-scale integrated models of biological pathways

Sakkaff, Z., Unluturk, B. D. & Pierobon, M., Sep 25 2019, Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019. Association for Computing Machinery, Inc, 3345495. (Proceedings of the 6th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

communication theory
Information theory
communication
information theory
model analysis

A quantitative microbial risk assessment model of Campylobacter in broiler chickens: Evaluating processing interventions

Dogan, O. B., Clarke, J., Mattos, F. & Wang, B., Jun 2019, In : Food Control. 100, p. 97-110 14 p.

Research output: Contribution to journalArticle

microbiological risk assessment
quantitative risk assessment
Campylobacter
Chickens
broiler chickens

A small viral potassium ion channel with an inherent inward rectification

Eckert, D., Schulze, T., Stahl, J., Rauh, O., Van Etten, J. L., Hertel, B., Schroeder, I., Moroni, A. & Thiel, G., Dec 1 2019, In : Channels (Austin, Tex.). 13, 1, p. 124-135 12 p.

Research output: Contribution to journalArticle

Open Access
Potassium Channels
Point Mutation
Phycodnaviridae
Lipid bilayers
HEK293 Cells

Assessment of the Dose–Response Relationship Between Folate Exposure and Cognitive Impairment: Synthesizing Data from Documented Studies

Wang, B., Sahyoun, N. R., Shao, K., Dutta, E. & Clarke, J., Jan 1 2019, (Accepted/In press) In : Risk Analysis.

Research output: Contribution to journalArticle

Folic Acid
Vitamins
Association reactions
Vitamin B 12 Deficiency
Risk assessment

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition (Communications Biology, (2018), 1, 1, (197), 10.1038/s42003-018-0199-z)

Kalbfleisch, T. S., Rice, E. S., DePriest, M. S., Walenz, B. P., Hestand, M. S., Vermeesch, J. R., O’Connell, B. L., Fiddes, I. T., Vershinina, A. O., Saremi, N. F., Petersen, J. L., Finno, C. J., Bellone, R. R., McCue, M. E., Brooks, S. A., Bailey, E., Orlando, L., Green, R. E., Miller, D. C., Antczak, D. F. & 1 others, MacLeod, J. N., Dec 1 2019, In : Communications Biology. 2, 1, 342.

Research output: Contribution to journalComment/debate

Open Access
funding
animal communication
Horses
Genes
Communication

Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus)

Clayton, J. B., Shields-Cutler, R. R., Hoops, S. L., Al-Ghalith, G. A., Sha, J. C. M., Johnson, T. J. & Knights, D., Oct 1 2019, In : American Journal of Primatology. 81, 10-11, e22977.

Research output: Contribution to journalArticle

hindgut
foregut
bacterial communities
primate
community structure

Bioprocesses for wastewater reuse: Closed- loop system for energy options

Azam, R., Pandey, A., Black, P. N., Tyagi, V. V. & Kothari, R., Mar 9 2019, Water Conservation, Recycling and Reuse: Issues and Challenges. Springer Singapore, p. 121-145 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

closed loop systems
bioenergy
Waste Water
Closed loop systems
biobased products

Blocking HIV-1 infection by chromosomal integrative expression of human CD4 on the surface of lactobacillus acidophilus ATCC 4356

Wei, W., Wiggins, J., Hu, D., Vrbanac, V., Bowder, D., Mellon, M., Tager, A., Sodroski, J. & Xiang, S. H., Jan 1 2019, In : Journal of virology. 93, 8, Y.

Research output: Contribution to journalArticle

Lactobacillus acidophilus
Virus Diseases
Human immunodeficiency virus 1
HIV-1
Lactobacillus
1 Citation (Scopus)

Board Invited review: The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health

Aluthge, N. D., van Sambeek, D. M., Carney-Hinkle, E. E., Li, Y. S., Fernando, S. C. & Burkey, T. E., Jan 1 2019, In : Journal of animal science. 97, 9, p. 3741-3757 17 p.

Research output: Contribution to journalReview article

Open Access
Microbiota
intestinal microorganisms
Swine
microbiology
Microbiology
4 Citations (Scopus)
Dust
Macrophages
Milk
Nutrition
Polarization

Bovine milk extracellular vesicles (EVs) modification elicits skeletal muscle growth in rats

Parry, H. A., Brooks Mobley, C., Mumford, P. W., Romero, M. A., Haun, C. T., Zhang, Y., Roberson, P. A., Zempleni, J., Ferrando, A. A., Vechetti, I. J., McCarthy, J. J., Young, K. C., Roberts, M. D. & Kavazis, A. N., Jan 1 2019, In : Frontiers in Physiology. 10, MAR, 436.

Research output: Contribution to journalArticle

Open Access
Milk
Skeletal Muscle
Growth
Diet
Sonication
2 Citations (Scopus)

Candida albicans quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in Staphylococcus aureus

Vila, T., Kong, E. F., Ibrahim, A., Piepenbrink, K., Shetty, A. C., McCracken, C., Bruno, V. & Jabra-Rizk, M. A., Jan 1 2019, In : Virulence. 10, 1, p. 625-642 18 p.

Research output: Contribution to journalArticle

Open Access
Farnesol
Quorum Sensing
Candida albicans
Sulfhydryl Compounds
Staphylococcus aureus

Changes in lipid classes of Drosophila melanogaster in response to selection for three stress traits

Ko, L., Harshman, L., Hangartner, S., Hoffmann, A., Kachman, S. & Black, P., Aug 1 2019, In : Journal of Insect Physiology. 117, 103890.

Research output: Contribution to journalArticle

Drosophila melanogaster
Desiccation
Lipids
coma
Chills

CHAPTER 13: Bioactive Egg Proteins

Nolasco, E., Guha, S. & Majumder, K., Jan 1 2019, Steviol Glycosides: Cultivation, Processing, Analysis and Applications in Food. Wu, J. (ed.). 14 ed. Royal Society of Chemistry, p. 223-258 36 p. (Food Chemistry, Function and Analysis; vol. 2019-January, no. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

Egg Proteins
egg proteins
Bioactivity
bioactive properties
peptides

CHAPTER 15: Interactions between Grains and the Microbiome

Brahma, S. & Rose, D. J., Jan 1 2019, Steviol Glycosides: Cultivation, Processing, Analysis and Applications in Food. Camire, M. E. & Beta, T. (eds.). 6 ed. Royal Society of Chemistry, p. 332-356 25 p. (Food Chemistry, Function and Analysis; vol. 2019-January, no. 6).

Research output: Chapter in Book/Report/Conference proceedingChapter

whole grain foods
Microbiota
intestinal microorganisms
Health
Fermentation

Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection

Clayton, J. B., Danzeisen, J. L., Johnson, T. J., Trent, A. M., Hayer, S. S., Murphy, T., Wuenschmann, A., Elder, M., Shen, Z., Mannion, A., Bryant, E., Knights, D. & Fox, J. G., Apr 2019, In : Journal of medical primatology. 48, 2, p. 114-122 9 p.

Research output: Contribution to journalArticle

Campylobacter upsaliensis
Campylobacter jejuni
Campylobacter
Primates
Host Specificity

Chloroviruses lure hosts through long-distance chemical signaling

Dunigan, D. D., Al-Sammak, M., Al-Ameeli, Z., Agarkova, I. V., DeLong, J. P. & Van Etten, J. L., Jan 1 2019, In : Journal of virology. 93, 7, e01688.

Research output: Contribution to journalArticle

Chlorovirus
Viruses
viruses
Population Dynamics
Planets
1 Citation (Scopus)
Ghrelin
Ethanol
Alcohols
Insulin
Nonesterified Fatty Acids

ClpC affects the intracellular survival capacity of Staphylococcus aureus in non-professional phagocytic cells

Gunaratnam, G., Tuchscherr, L., Elhawy, M. I., Bertram, R., Eisenbeis, J., Spengler, C., Tschernig, T., Löffler, B., Somerville, G. A., Jacobs, K., Herrmann, M. & Bischoff, M., Dec 1 2019, In : Scientific reports. 9, 1, 16267.

Research output: Contribution to journalArticle

Open Access
Phagocytes
Staphylococcus aureus
Survival
Heat-Shock Proteins
Bacteria

Cockroach allergens: Coping with challenging complexity

Kleine-Tebbe, J., Hamilton, R. G. & Goodman, R. E., Apr 2019, In : Journal of Allergy and Clinical Immunology. 143, 4, p. 1342-1344 3 p.

Research output: Contribution to journalEditorial

Immunologic Desensitization
Cockroaches
Allergens

Coding sequences of sarcoplasmic reticulum calcium ATPase regulatory peptides and expression of calcium regulatory genes in recurrent exertional rhabdomyolysis

Valberg, S. J., Soave, K., Williams, Z. J., Perumbakkam, S., Schott, M., Finno, C. J., Petersen, J. L., Fenger, C., Autry, J. M. & Thomas, D. D., Mar 1 2019, In : Journal of Veterinary Internal Medicine. 33, 2, p. 933-941 9 p.

Research output: Contribution to journalArticle

Sarcoplasmic Reticulum Calcium-Transporting ATPases
rhabdomyolysis
Rhabdomyolysis
sarcoplasmic reticulum
Ca2-transporting ATPase

Cognitive aids and food choice: Real-time calorie counters reduce calories ordered and correct biases in calorie estimates

Gustafson, C. R. & Zeballos, E., Oct 1 2019, In : Appetite. 141, 104320.

Research output: Contribution to journalArticle

Food
Technology
Social Adjustment
Access to Information
Meals

Comparison of recovery and immunochemical detection of peanut proteins from differentially roasted peanut flour using ELISA

Jayasena, S., Koppelman, S. J., Nayak, B., Taylor, S. L. & Baumert, J. L., Sep 15 2019, In : Food Chemistry. 292, p. 32-38 7 p.

Research output: Contribution to journalArticle

peanut flour
peanut protein
Flour
peanuts
Enzyme-Linked Immunosorbent Assay
Drug Combinations
HIV-1
Pharmacokinetics
Drug Interactions
Pharmaceutical Preparations

Cryopreservation of Paramecium bursaria Chlorella Virus-1 during an active infection cycle of its host

Coy, S. R., Alsante, A. N., Van Etten, J. L. & Wilhelm, S. W., Mar 2019, In : PloS one. 14, 3, e0211755.

Research output: Contribution to journalArticle

Open Access
Paramecium bursaria Chlorella virus 1
Paramecium
Chlorella
Cryopreservation
Viruses

Depletion of mitochondrial protease OMA1 alters proliferative properties and promotes metastatic growth of breast cancer cells

Daverey, A., Levytskyy, R. M., Stanke, K. M., Viana, M. P., Swenson, S., Hayward, S. L., Narasimhan, M., Khalimonchuk, O. & Kidambi, S., Dec 1 2019, In : Scientific reports. 9, 1, 14746.

Research output: Contribution to journalArticle

Open Access
Peptide Hydrolases
Breast Neoplasms
Growth
Mitochondrial Proteins
Mental Competency

Deriving individual threshold doses from clinical food challenge data for population risk assessment of food allergens

Westerhout, J., Baumert, J. L., Blom, W. M., Allen, K. J., Ballmer-Weber, B., Crevel, R. W. R., Dubois, A. E. J., Fernández-Rivas, M., Greenhawt, M. J., Hourihane, J. O. B., Koplin, J. J., Kruizinga, A. G., Le, T. M., Sampson, H. A., Shreffler, W. G., Turner, P. J., Taylor, S. L., Houben, G. F. & Remington, B. C., Nov 2019, In : Journal of Allergy and Clinical Immunology. 144, 5, p. 1290-1309 20 p.

Research output: Contribution to journalArticle

Allergens
Food
Food Hypersensitivity
Population
Risk Management

Design and characterization of a consensus hemagglutinin vaccine immunogen against H3 influenza A viruses of swine

Sun, H., Sur, J. H., Sillman, S., Steffen, D. & Vu, H. L. X., Dec 2019, In : Veterinary Microbiology. 239, 108451.

Research output: Contribution to journalArticle

Open Access
Influenza A virus
Hemagglutinins
hemagglutinins
Swine
Vaccines

Detection of atypical porcine pestivirus genome in newborn piglets affected by congenital tremor and high preweaning mortality

Sutton, K. M., Lahmers, K. K., Harris, S. P., Wijesena, H. R., Mote, B. E., Kachman, S. D., Borza, T. & Ciobanu, D. C., Oct 3 2019, In : Journal of animal science. 97, 10, p. 4093-4100 8 p.

Research output: Contribution to journalArticle

Open Access
Pestivirus
Tremor
piglets
neonates
Swine
Exosome Multienzyme Ribonuclease Complex
Exosomes
Inbred C57BL Mouse
Milk
Cecum

Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population

Perez-Munoz, M. E., McKnite, A. M., Williams, E. G., Auwerx, J., Williams, R. W., Peterson, D. A. & Ciobanu, D. C., Jan 1 2019, In : PloS one. 14, 10, e0224100.

Research output: Contribution to journalArticle

Open Access
Cecum
Population Genetics
Nutrition
cecum
Fats

DNA barcoding evidence for the North American presence of alfalfa cyst nematode, Heterodera medicaginis

Powers, T., Skantar, A., Harris, T., Higgins, R., Mullin, P., Hafez, S., Handoo, Z., Todd, T. & Powers, K., Jan 1 2019, In : Journal of Nematology. 51, 1

Research output: Contribution to journalArticle

Open Access
Heterodera
cyst nematodes
DNA barcoding
Heterodera glycines
alfalfa

DNA uptake by type IV filaments

Piepenbrink, K. H., Jan 1 2019, In : Frontiers in Molecular Biosciences. 6, FEB, 00001.

Research output: Contribution to journalReview article

Open Access
DNA
Mental Competency
Micrococcus luteus
Bacterial DNA
Experiments

Dynamic and structural differences between heme oxygenase-1 and -2 are due to differences in their C-terminal regions

Kochert, B. A., Fleischhacker, A. S., Wales, T. E., Becker, D. F., Engen, J. R. & Ragsdale, S. W., Jan 1 2019, In : Journal of Biological Chemistry. 294, 20, p. 8259-8272 14 p.

Research output: Contribution to journalArticle

Heme Oxygenase-1
Heme
Heme Oxygenase (Decyclizing)
Catalytic Domain
Anchors