Research Output 1970 2019

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2019

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pancreatic Neoplasms
Neoplasms
Metabolic Networks and Pathways
Glutamine
Oxygen Consumption

In situ AFM analysis investigating disassembly of DNA nanoparticles and nanofilms

Zou, Y., Wan, L., Blacklock, J., Xie, L., Carroll, S., Oupicky, D. & Mao, G., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 199-209 11 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanoparticles
DNA
Genes
Safety
polycations

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cachexia
Pancreatic Neoplasms
Muscles
Fats
Rotarod Performance Test

Synthesis of bioreducible polycations with controlled topologies

You, Y. Z., Yan, J. J., Yu, F., Yu, Z. Q. & Oupicky, D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 27-38 12 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Disulfides
Nucleic Acids
Glutathione
Cytoplasm
Genes
2018

Burnout, substance abuse, and suicide: A surgical perspective

Are, C., Caniglia, A. J., Sharma, A. & Gold, J. P., Jan 1 2018, Practical Ethics for the Surgeon. Wolters Kluwer Health Adis (ESP), p. 229-262 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Suicide
Substance-Related Disorders

Evaluating the metabolic impact of hypoxia on pancreatic cancer cells

Murthy, D., Vernucci, E., Goode, G., Abrego, J. & Singh, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 81-93 13 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pancreatic Neoplasms
NAD
Glutamine
Adenosine Triphosphate
Glucose
4 Citations (Scopus)

Evaluation of macrophage polarization in pancreatic cancer microenvironment under hypoxia

Attri, K. S., Mehla, K. & Singh, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 265-276 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumor Microenvironment
Pancreatic Neoplasms
Macrophages
Hypoxia-Inducible Factor 1
Neoplasms
4 Citations (Scopus)

Hypoxia-induced metabolomic alterations in pancreatic cancer cells

Gunda, V., Kumar, S., Dasgupta, A. & Singh, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1742. p. 95-105 11 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics
Hypoxia-Inducible Factor 1
Pancreatic Neoplasms
Tumor Microenvironment
Tandem Mass Spectrometry

Hypoxia-mediated in vivo tumor glucose uptake measurement and analysis

Shukla, S. K., Mulder, S. E. & Singh, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1742. p. 107-113 7 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Glucose
Hypoxia-Inducible Factor 1
Neoplasms
Facilitative Glucose Transport Proteins
Pancreatic Neoplasms
1 Citation (Scopus)

Transcriptional profiling using RNA-seq to study hypoxia-mediated gene regulation

Shukla, S. K., King, R. J. & Singh, P., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 55-66 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Genes
Transcription Factors
Gene Expression
Cell Separation
2 Citations (Scopus)

Triheptanoin: A rescue therapy for cardiogenic shock in carnitine-acylcarnitine translocase deficiency

Mahapatra, S., Ananth, A., Baugh, N., Damian, M. & Enns, G. M., Jan 1 2018, JIMD Reports. Springer, p. 19-23 5 p. (JIMD Reports; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

Carnitine Acyltransferases
Cardiogenic Shock
Fatty Acids
Investigational Drugs
Oxidation
1 Citation (Scopus)

Unfolding thermodynamics of nucleic acids: Determining heat capacity effects using differential scanning calorimetry (DSC)

Carr, C. E., Reiling-Steffensmeier, C., Khutsishvili, I. & Marky, L. A., Jan 1 2018, Differential Scanning Calorimetry: Basics and Applications. Nova Science Publishers, Inc., p. 1-41 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleic acids
Differential Scanning Calorimetry
differential scanning calorimetry
Thermodynamics
thermodynamics
2017
4 Citations (Scopus)

RUNX1 and CBFβ mutations and activities of their wild-type alleles in AML

Hyde, R. K., Liu, P. & Friedman, A. D., Jan 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 265-282 18 p. (Advances in Experimental Medicine and Biology; vol. 962).

Research output: Chapter in Book/Report/Conference proceedingChapter

Myelodysplastic-Myeloproliferative Diseases
Leukemia
Alleles
Mutation
Germ-Line Mutation
2016

Ancillary diagnostic opportunities: Harnessing circulating tumor cells, tumor educated platelets, and extracellular vesicles for the early detection of pancreatic cancer

Cruz, E. & Batra, S. K., Jan 1 2016, Gastrointestinal Cancers: Prevention, Detection and Treatment. Nova Science Publishers, Inc., Vol. 2. p. 81-92 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Circulating Neoplastic Cells
Pancreatic Neoplasms
Early Detection of Cancer
Blood Platelets
Neoplasms

BAR Domains and BAR Domain Superfamily Proteins

Sharma, M. & Caplan, S. H., Jan 1 2016, Organizational Cell Biology. Elsevier Inc., Vol. 2. p. 491-502 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Membranes
Organelles
Cell Division
Cell Movement
Actins

Bioinformatics analysis to identify cell adhesion molecules in cancer

Sadanandam, A., Gibb, W. J. & Singh, R. K., Apr 19 2016, Adhesion Molecules. CRC Press, p. 309-325 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Adhesion Molecules
Bioinformatics
Computational Biology
Tumors
Cells
1 Citation (Scopus)

Biomolecules

Burns, A., Olszowy, P. & Ciborowski, P. S., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 7-24 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomolecules
Peptides
Proteins
Fractionation
Chemical analysis

Cytokines and chemokines

Huang, Y. & Zheng, J. C., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 261-283 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemokines
Cytokines
Intercellular Signaling Peptides and Proteins
Inflammation
Brain
1 Citation (Scopus)

Endolysosomal escape into cytosol

Saraswathy, M. & Oupicky, D., Apr 6 2016, Drug Delivery Across Physiological Barriers. Pan Stanford Publishing Pte. Ltd., p. 341-365 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Immunoaffinity Depletion of Highly Abundant Proteins for Proteomic Sample Preparation

Wiederin, J. & Ciborowski, P. S., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 101-114 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Serum Albumin
Plasmas
Proteomics
Quality control

Novel cancer therapies by molecular targeting distinct growth factor pathways and drug resistance-associated molecules in cancer-and metastasis-initiating cells

Mimeault, M. & Batra, S. K., Apr 19 2016, Role of Cancer Stem Cells in Cancer Biology and Therapy. CRC Press, p. 199-226 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Resistance
Intercellular Signaling Peptides and Proteins
Neoplasm Metastasis
Neoplasms
Therapeutics
10 Citations (Scopus)

Production of Recombinant Chemokines and Validation of Refolding

Veldkamp, C. T., Koplinski, C. A., Jensen, D. R., Peterson, F. C., Smits, K. M., Smith, B. L., Johnson, S. K., Lettieri, C., Buchholz, W. G., Solheim, J. C. & Volkman, B. F., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 539-565 27 p. (Methods in Enzymology; vol. 570).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemokines
Functional analysis
Bioactivity
Proteins
Clinical Trials

Proteomic Database Search and Analytical Quantification for Mass Spectrometry

Wojtkiewicz, M., Wiederin, J. & Ciborowski, P. S., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 193-210 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry
Bioinformatics
Proteomics

Proteomics and genomics in neuroimmunological disorders

Donnelly, M. R., Rozek, W. & Ciborowski, P. S., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 941-958 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics
Proteomics
Immune System Phenomena
Single-Cell Analysis
Proteins

Stem cells and neurogenesis for brain development, degeneration and therapy

Peer, J., Zhang, H., Peng, H., Vance, K., Huang, Y. & Zheng, J. C., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 217-243 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurogenesis
Neural Stem Cells
Stem Cells
Brain
Research
2 Citations (Scopus)

SWATH-MS: Data Acquisition and Analysis

Frederick, K. & Ciborowski, P. S., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 161-173 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Principal component analysis
Labels
Data acquisition
Pipelines
Proteins
3 Citations (Scopus)

The proteomic characterization of plasma or serum from HIV-infected patients

Haverland, N. A., Villeneuve, L. M., Ciborowski, P. S. & Fox, H. S., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 293-310 18 p. (Methods in Molecular Biology; vol. 1354).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteome
Running
Proteomics
Mass Spectrometry
HIV

Validation in Proteomics and Regulatory Affairs

Silberring, J., Wojtkiewicz, M. & Ciborowski, P. S., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 253-271 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Design of experiments
Experiments
Bioinformatics
Throughput
Proteomics
2015
1 Citation (Scopus)

Epigenetics and micrornas in cancer

Wise, P. M., Challagundla, K. B. & Fabbri, M., Jan 1 2015, Cancer Immunology: A Translational Medicine Context. Springer Berlin Heidelberg, p. 285-294 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
Epigenomics
Neoplasms
Genes
Gene Expression

Prostate cancer

Datta, K. & Tindall, D. J., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 591-597 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prostatic Neoplasms
Prostate
Neoplasms
Androgens
Chromatin
5 Citations (Scopus)

Qualitative and quantitative analysis of endocytic recycling

Reineke, J. B., Xie, S., Naslavsky, N. & Caplan, S. H., 2015, Methods in Cell Biology. Academic Press Inc., Vol. 130. p. 139-155 17 p. (Methods in Cell Biology; vol. 130).

Research output: Chapter in Book/Report/Conference proceedingChapter

Endocytosis
Clathrin
Cell Membrane
Intracellular Membranes
Eukaryotic Cells

Translational Imaging for Regenerative Medicine

Kelkar, S. S. & Mohs, A. M., Jan 1 2015, Translational Regenerative Medicine. Elsevier Inc., p. 257-265 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Regenerative Medicine
Magnetic Resonance Imaging
Positron-Emission Tomography
Stem Cells
Tissue Engineering

Tumor microenvironment: Blood vascular system in cancer metastasis

Senapati, S., Singh, R. K. & Batra, S. K., Jan 1 2015, Systems Biology of Cancer. Cambridge University Press, p. 309-322 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumor Microenvironment
Blood Vessels
Tumors
Blood
Neoplasm Metastasis
2014
4 Citations (Scopus)

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. K. & Jain, M., Jan 1 2014, Drug Delivery System. Humana Press Inc., Vol. 1141. p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

Antibodies
Radioisotopes
Radioimmunotherapy
Chelating Agents
Biological Assay

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. K. & Jain, M., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1141. p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

Antibodies
Radioisotopes
Radioimmunotherapy
Chelating Agents
Biological Assay
1 Citation (Scopus)

Atomic force microscopy imaging of DNA delivery nanosystems

Zou, Y., Oupicky, D. & Mao, G., Apr 30 2014, NanoCellBiology - Multimodal Imaging in Biology and Medicine. Pan Stanford Publishing Pte. Ltd., p. 321-340 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanosystems
Atomic force microscopy
DNA
Imaging techniques

Hepatocellular carcinoma

Dhir, M. & Are, C., Sep 9 2014, Handbook of Pancreatic and Hepatobiliary Surgery. Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapter

Hepatocellular Carcinoma
2 Citations (Scopus)

Interaction of DNA intramolecular structures with their complementary strands: A thermodynamic approach for the control of gene expression

Khutsishvili, I., Johnson, S. E., Reiling, C., Prislan, I., Lee, H. T. & Marky, L. A., Jan 1 2014, Chemical Biology of Nucleic Acids: Fundamentals and Clinical Applications. Springer Berlin Heidelberg, p. 367-383 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermodynamics
Gene expression
Gene Expression
DNA
Hot Temperature
2013
1 Citation (Scopus)

Analysis of tumor-associated mucin glycotopes by western transfer methods

Gnanapragassam, V. S., Jain, M. & Batra, S. K., Jan 1 2013, Pancreatic Cancer: Methods and Protocols. Humana Press Inc., p. 331-340 10 p. (Methods in Molecular Biology; vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mucins
Polysaccharides
Neoplasms
Glycosylation
Lectins
2 Citations (Scopus)

Biomedical Applications of "Click"-Modified Cyclodextrins

Jia, Z., Singh, R. K. & Wang, D., Feb 6 2013, Click Chemistry in Glycoscience: New Developments and Strategies. John Wiley and Sons, p. 271-292 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cyclodextrins
Cycloaddition
Cycloaddition Reaction
Click Chemistry
Alkynes

Biomolecules

Olszowy, P., Burns, A. & Ciborowski, P. S., Jan 1 2013, Proteomic Profiling and Analytical Chemistry. Elsevier Inc., p. 7-24 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomolecules

Dominant-negative and knockdown approaches to studying PPAR activity

Singh, S. & Bennett, R. G., Jan 1 2013, Peroxisome Proliferator-Activated Receptors (PPARs): Methods and Protocols. Badr, M. & Youssef, J. (eds.). p. 87-98 12 p. (Methods in Molecular Biology; vol. 952).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peroxisome Proliferator-Activated Receptors
Cell Communication
Small Interfering RNA
Molecular Biology
Gene Expression

Human prostatic acid phosphatase in prostate carcinogenesis

Muniyan, S., Chou, Y. W., Ou-Yang, S. Q. & Lin, M-F., Jan 1 2013, Prostate Cancer: Biochemistry, Molecular Biology and Genetics. Springer New York, p. 323-348 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prostate
Prostatic Neoplasms
Carcinogenesis
Prostate-Specific Antigen
Protein Tyrosine Phosphatases
1 Citation (Scopus)

Immunoaffinity Depletion of High-Abundant Proteins for Proteomic Sample Preparation

Ciborowski, P. S., Jan 1 2013, Proteomic Profiling and Analytical Chemistry. Elsevier Inc., p. 91-105 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteins
Proteomics
6 Citations (Scopus)

Immunohistochemistry of pancreatic neoplasia

Kaur, S., Shimizu, T., Baine, M. J., Kumar, S. & Batra, S. K., Jan 1 2013, Pancreatic Cancer: Methods and Protocols. Humana Press Inc., p. 29-42 14 p. (Methods in Molecular Biology; vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunohistochemistry
Antigens
Neoplasms
Antibody Specificity
Tumor Biomarkers
1 Citation (Scopus)

Mucin family of glycoproteins

Brown, R. B. & Hollingsworth, M. A., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 200-204 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mucins
Glycoproteins
Respiratory system
Membranes
Signal transduction

Proteomic Database Search and Analytical Quantification

Pan, H. & Ciborowski, P. S., Jan 1 2013, Proteomic Profiling and Analytical Chemistry. Elsevier Inc., p. 151-164 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics

Quantitative Measurements in Proteomics

Drabik, A., Ciborowski, P. S. & Silberring, J., Jan 1 2013, Proteomic Profiling and Analytical Chemistry. Elsevier Inc., p. 135-150 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics
11 Citations (Scopus)

Quantitative real-time PCR expression analysis of peripheral blood mononuclear cells in pancreatic cancer patients

Baine, M. J., Mallya, K. & Batra, S. K., Jan 1 2013, Pancreatic Cancer: Methods and Protocols. Humana Press Inc., p. 157-173 17 p. (Methods in Molecular Biology; vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pancreatic Neoplasms
Real-Time Polymerase Chain Reaction
Blood Cells
RNA
Complementary DNA

Role of MicroRNAs in cancer epigenetics

Challagundla, K. B., Wise, P. & Fabbri, M., Feb 1 2013, Epigenetics and Cancer. Springer Netherlands, p. 13-31 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
Epigenomics
Untranslated RNA
Neoplasms
Small Untranslated RNA