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2020

Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope

Vellichirammal, N. N., Albahrani, A., Li, Y. & Guda, C., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 13-25 13 p. (Methods in Molecular Biology; vol. 2079).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neutrophils in the Tumor Microenvironment

Wu, L., Saxena, S. & Singh, R. K., Jan 1 2020, Advances in Experimental Medicine and Biology. Springer, p. 1-20 20 p. (Advances in Experimental Medicine and Biology; vol. 1224).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pancreatic Stellate Cells: The Key Orchestrator of The Pancreatic Tumor Microenvironment

Thomas, D. & Radhakrishnan, P., Jan 1 2020, Advances in Experimental Medicine and Biology. Springer, p. 57-70 14 p. (Advances in Experimental Medicine and Biology; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Evaluating the metabolic alterations in pancreatic cancer

Dasgupta, A., Shukla, S. K., Gunda, V., King, R. J. & Singh, P. K., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 221-228 8 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

In situ AFM analysis investigating disassembly of DNA nanoparticles and nanofilms

Zou, Y., Wan, L., Blacklock, J., Xie, L., Carroll, S., Oupicky, D. & Mao, G., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 199-209 11 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and physiological evaluation of pancreatic cancer-induced cachexia

Shukla, S. K., Dasgupta, A., Mulder, S. E. & Singh, P. K., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 321-333 13 p. (Methods in Molecular Biology; vol. 1882).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer: An ever-emerging arm of cancer drug discovery

Ganguly, K., Batra, S. K. & Kaur, S., Apr 17 2019, Animal Models in Cancer Drug Discovery. Elsevier, p. 249-266 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthesis of bioreducible polycations with controlled topologies

You, Y. Z., Yan, J. J., Yu, F., Yu, Z. Q. & Oupicky, D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 27-38 12 p. (Methods in Molecular Biology; vol. 1943).

Research output: Chapter in Book/Report/Conference proceedingChapter

Thermodynamic contributions for the inclusion of bulges and mismatches in dna hairpin loops

Shikiya, R. & Marky, L. A., Jun 5 2019, A Closer Look at Calorimetry. Nova Science Publishers, Inc., p. 31-60 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Burnout, substance abuse, and suicide: A surgical perspective

Are, C., Caniglia, A. J., Sharma, A. & Gold, J. P., Jan 1 2018, Practical Ethics for the Surgeon. Wolters Kluwer Health Adis (ESP), p. 229-262 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluating the metabolic impact of hypoxia on pancreatic cancer cells

Murthy, D., Vernucci, E., Goode, G., Abrego, J. & Singh, P. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 81-93 13 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evaluation of macrophage polarization in pancreatic cancer microenvironment under hypoxia

Attri, K. S., Mehla, K. & Singh, P. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 265-276 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations

Hypoxia-induced metabolomic alterations in pancreatic cancer cells

Gunda, V., Kumar, S., Dasgupta, A. & Singh, P. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 95-105 11 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations

Hypoxia-mediated in vivo tumor glucose uptake measurement and analysis

Shukla, S. K., Mulder, S. E. & Singh, P. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

Role of preoperative biliary stenting and preoperative preparation before pancreaticoduodenectomy

Batra, R. & Are, C., Jun 1 2018, Surgery for Pancreatic and Periampullary Cancer: Principles and Practice. Springer Singapore, p. 57-64 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Staphylococcal enzymes and virulence

Ciborowski, P. & Jeljaszewicz, J., Jan 1 2018, Bacterial Enzymes and Virulence. CRC Press, p. 145-183 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcriptional profiling using RNA-seq to study hypoxia-mediated gene regulation

Shukla, S. K., King, R. J. & Singh, P. K., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 55-66 12 p. (Methods in Molecular Biology; vol. 1742).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Triheptanoin: A rescue therapy for cardiogenic shock in carnitine-acylcarnitine translocase deficiency

Mahapatra, S., Ananth, A., Baugh, N., Damian, M. & Enns, G. M., Jan 1 2018, JIMD Reports. Springer, p. 19-23 5 p. (JIMD Reports; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Unfolding thermodynamics of nucleic acids: Determining heat capacity effects using differential scanning calorimetry (DSC)

Carr, C. E., Reiling-Steffensmeier, C., Khutsishvili, I. & Marky, L. A., Jan 1 2018, Differential Scanning Calorimetry: Basics and Applications. Nova Science Publishers, Inc., p. 1-41 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2017

RUNX1 and CBFβ mutations and activities of their wild-type alleles in AML

Hyde, R. K., Liu, P. & Friedman, A. D., Jan 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 265-282 18 p. (Advances in Experimental Medicine and Biology; vol. 962).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2016

Ancillary diagnostic opportunities: Harnessing circulating tumor cells, tumor educated platelets, and extracellular vesicles for the early detection of pancreatic cancer

Cruz, E. & Batra, S. K., Jan 1 2016, Gastrointestinal Cancers: Prevention, Detection and Treatment. Nova Science Publishers, Inc., Vol. 2. p. 81-92 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

BAR Domains and BAR Domain Superfamily Proteins

Sharma, M. & Caplan, S., Jan 1 2016, Organizational Cell Biology. Elsevier Inc., Vol. 2. p. 491-502 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioinformatics analysis to identify cell adhesion molecules in cancer

Sadanandam, A., Gibb, W. J. & Singh, R. K., Apr 19 2016, Adhesion Molecules. CRC Press, p. 309-325 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomolecules

Burns, A., Olszowy, P. & Ciborowski, P., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 7-24 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Cytokines and chemokines

Huang, Y. & Zheng, J., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 261-283 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endolysosomal escape into cytosol

Saraswathy, M. & Oupický, D., Apr 6 2016, Drug Delivery Across Physiological Barriers. Pan Stanford Publishing Pte. Ltd., p. 341-365 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Immunoaffinity Depletion of Highly Abundant Proteins for Proteomic Sample Preparation

Wiederin, J. & Ciborowski, P., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 101-114 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Novel cancer therapies by molecular targeting distinct growth factor pathways and drug resistance-associated molecules in cancer-and metastasis-initiating cells

Mimeault, M. & Batra, S. K., Apr 19 2016, Role of Cancer Stem Cells in Cancer Biology and Therapy. CRC Press, p. 199-226 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Production of Recombinant Chemokines and Validation of Refolding

Veldkamp, C. T., Koplinski, C. A., Jensen, D. R., Peterson, F. C., Smits, K. M., Smith, B. L., Johnson, S. K., Lettieri, C., Buchholz, W. G., Solheim, J. C. & Volkman, B. F., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 539-565 27 p. (Methods in Enzymology; vol. 570).

Research output: Chapter in Book/Report/Conference proceedingChapter

12 Scopus citations

Proteomic Database Search and Analytical Quantification for Mass Spectrometry

Wojtkiewicz, M., Wiederin, J. & Ciborowski, P., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 193-210 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteomics and genomics in neuroimmunological disorders

Donnelly, M. R., Rozek, W. & Ciborowski, P. S., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 941-958 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem cells and neurogenesis for brain development, degeneration and therapy

Peer, J., Zhang, H., Peng, H., Vance, K., Huang, Y. & Zheng, J. C., Jan 1 2016, Neuroimmune Pharmacology. Springer International Publishing, p. 217-243 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

SWATH-MS: Data Acquisition and Analysis

Frederick, K. & Ciborowski, P., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 161-173 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

The proteomic characterization of plasma or serum from HIV-infected patients

Haverland, N. A., Villeneuve, L. M., Ciborowski, P. S. & Fox, H. S., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 293-310 18 p. (Methods in Molecular Biology; vol. 1354).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Validation in Proteomics and Regulatory Affairs

Silberring, J., Wojtkiewicz, M. & Ciborowski, P., Mar 22 2016, Proteomic Profiling and Analytical Chemistry: The Crossroads: Second Edition. Elsevier Inc., p. 253-271 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Epigenetics and micrornas in cancer

Wise, P. M., Challagundla, K. B. & Fabbri, M., Jan 1 2015, Cancer Immunology: A Translational Medicine Context. Springer Berlin Heidelberg, p. 285-294 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Prostate cancer

Datta, K. & Tindall, D. J., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 591-597 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Translational Imaging for Regenerative Medicine

Kelkar, S. S. & Mohs, A. M., Jan 1 2015, Translational Regenerative Medicine. Elsevier Inc., p. 257-265 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumor microenvironment: Blood vascular system in cancer metastasis

Senapati, S., Singh, R. K. & Batra, S. K., Jan 1 2015, Systems Biology of Cancer. Cambridge University Press, p. 309-322 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. K. & Jain, M., 2014, Methods in Molecular Biology. Humana Press Inc., Vol. 1141. p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

Antibody labeling with radioiodine and radiometals

Gupta, S., Batra, S. & Jain, M., 2014, Drug Delivery System. Humana Press Inc., p. 147-157 11 p. (Methods in Molecular Biology; vol. 1141).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Atomic force microscopy imaging of DNA delivery nanosystems

Zou, Y., Oupicky, D. & Mao, G., Apr 30 2014, NanoCellBiology - Multimodal Imaging in Biology and Medicine. Pan Stanford Publishing Pte. Ltd., p. 321-340 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Hepatocellular carcinoma

Dhir, M. & Are, C., Sep 9 2014, Handbook of Pancreatic and Hepatobiliary Surgery. Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapter

Interaction of DNA intramolecular structures with their complementary strands: A thermodynamic approach for the control of gene expression

Khutsishvili, I., Johnson, S. E., Reiling, C., Prislan, I., Lee, H. T. & Marky, L. A., Jan 1 2014, Chemical Biology of Nucleic Acids: Fundamentals and Clinical Applications. Springer Berlin Heidelberg, p. 367-383 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2013

Analysis of tumor-associated mucin glycotopes by western transfer methods

Gnanapragassam, V. S., Jain, M. & Batra, S. K., 2013, Pancreatic Cancer: Methods and Protocols. Humana Press Inc., p. 331-340 10 p. (Methods in Molecular Biology; vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Biomedical Applications of "Click"-Modified Cyclodextrins

Jia, Z., Singh, R. K. & Wang, D., Feb 6 2013, Click Chemistry in Glycoscience: New Developments and Strategies. John Wiley and Sons, p. 271-292 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Biomolecules

Olszowy, P., Burns, A. & Ciborowski, P., Jan 2013, Proteomic Profiling and Analytical Chemistry. Elsevier Inc., p. 7-24 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dominant-negative and knockdown approaches to studying PPAR activity

Singh, S. & Bennett, R. G., Jan 1 2013, Peroxisome Proliferator-Activated Receptors (PPARs): Methods and Protocols. Badr, M. & Youssef, J. (eds.). p. 87-98 12 p. (Methods in Molecular Biology; vol. 952).

Research output: Chapter in Book/Report/Conference proceedingChapter

Endocrine mechanisms, androgen receptor and carcinogenesis, and hormone escape

Datta, K. & Tindall, D. J., Jul 1 2013, Prostate Cancer: A Comprehensive Perspective. Springer-Verlag London Ltd, p. 35-41 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Human prostatic acid phosphatase in prostate carcinogenesis

Muniyan, S., Chou, Y. W., Ou-Yang, S. Q. & Lin, M. F., Jan 1 2013, Prostate Cancer: Biochemistry, Molecular Biology and Genetics. Springer New York, p. 323-348 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter