Research Output

2020

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

Rice, E. S., Koren, S., Rhie, A., Heaton, M. P., Kalbfleisch, T. S., Hardy, T., Hackett, P. H., Bickhart, D. M., Rosen, B. D., Ley, B. V., Maurer, N. W., Green, R. E., Phillippy, A. M., Petersen, J. L. & Smith, T. P. L., Apr 6 2020, In : GigaScience. 9, 4, giaa029.

Research output: Contribution to journalArticle

Open Access

Divergent phenotypic response of rice accessions to transient heat stress during early seed development

Paul, P., Dhatt, B. K., Sandhu, J., Hussain, W., Irvin, L., Morota, G., Staswick, P. & Walia, H., Jan 1 2020, In : Plant Direct. 4, 1, e00196.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Effect of dietary medium-chain fatty acids on nursery pig growth performance, fecal microbial composition, and mitigation properties against porcine epidemic diarrhea virus following storage

Gebhardt, J. T., Thomson, K. A., Woodworth, J. C., Dritz, S. S., Tokach, M. D., Derouchey, J. M., Goodband, R. D., Jones, C. K., Cochrane, R. A., Niederwerder, M. C., Fernando, S., Abbas, W. & Burkey, T. E., Jan 2 2020, In : Journal of animal science. 98, 1, skz358.

Research output: Contribution to journalArticle

1 Scopus citations

Functionally annotating regulatory elements in the equine genome using histone mark chip-seq

Kingsley, N. B., Kern, C., Creppe, C., Hales, E. N., Zhou, H., Kalbfleisch, T. S., Macleod, J. N., Petersen, J. L., Finno, C. J. & Bellone, R. R., Jan 2020, In : Genes. 11, 1, 3.

Research output: Contribution to journalArticle

Open Access

Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping

Baba, T., Momen, M., Campbell, M. T., Walia, H. & Morota, G., Jan 1 2020, In : PloS one. 15, 2, e0228118.

Research output: Contribution to journalArticle

Open Access

Upregulation of the type I interferon pathway in feedlot cattle persistently infected with bovine viral diarrhea virus

Nilson, S. M., Workman, A. M., Sjeklocha, D., Brodersen, B., Grotelueschen, D. M. & Petersen, J. L., Mar 2020, In : Virus Research. 278, 197862.

Research output: Contribution to journalArticle

Uterine Torsion Dystocia Complicated by Perosomus Elumbis in an Angus Calf Associated with a Consanguineous Mating

Helms, A. B., Thompson, R. E., Lawton, S., Petersen, J. L., Watson, A., Sula, M. J., Steffen, D. & Whitlock, B. K., Jan 1 2020, In : Case Reports in Veterinary Medicine. 2020, 6543037.

Research output: Contribution to journalArticle

Open Access

Vascular endothelial growth factor A isoforms modulate follicle development in peripubertal heifers independent of diet through diverse signal transduction pathways

Abedal-Majed, M. A., Kurz, S. G., Springman, S. A., McNeel, A. K., Freetly, H. C., Largen, V., Magamage, M., Sargent, K. M., Wood, J. R., Cushman, R. A. & Cupp, A. S., Mar 13 2020, In : Biology of reproduction. 102, 3, p. 680-692 13 p.

Research output: Contribution to journalArticle

Whole blood transcriptome analysis in feedlot cattle after 35 days of supplementation with a β1-adrenergic agonist

Burrack, R. M., Duffy, E. M., Yates, D. T., Schmidt, T. B. & Petersen, J. L., Feb 1 2020, In : Journal of Applied Genetics. 61, 1, p. 117-121 5 p.

Research output: Contribution to journalArticle

2019

A genome-wide association study for gestation length in swine

See, G. M., Trenhaile-Grannemann, M. D., Spangler, M. L., Ciobanu, D. C. & Mote, B. E., Oct 1 2019, In : Animal genetics. 50, 5, p. 539-542 4 p.

Research output: Contribution to journalArticle

Board Invited review: The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health

Aluthge, N. D., van Sambeek, D. M., Carney-Hinkle, E. E., Li, Y. S., Fernando, S. C. & Burkey, T. E., Jan 1 2019, In : Journal of animal science. 97, 9, p. 3741-3757 17 p.

Research output: Contribution to journalReview article

Open Access
3 Scopus citations

Body composition estimated by bioelectrical impedance analyses is diminished by prenatal stress in neonatal lambs and by heat stress in feedlot wethers

Gibbs, R. L., Cadaret, C. N., Swanson, R. M., Beede, K. A., Posont, R. J., Schmidt, T. B., Petersen, J. L. & Yates, D. T., Dec 16 2019, In : Translational Animal Science. 3, p. 1691-1695 5 p.

Research output: Contribution to journalArticle

Open Access

Coding sequences of sarcoplasmic reticulum calcium ATPase regulatory peptides and expression of calcium regulatory genes in recurrent exertional rhabdomyolysis

Valberg, S. J., Soave, K., Williams, Z. J., Perumbakkam, S., Schott, M., Finno, C. J., Petersen, J. L., Fenger, C., Autry, J. M. & Thomas, D. D., Mar 1 2019, In : Journal of Veterinary Internal Medicine. 33, 2, p. 933-941 9 p.

Research output: Contribution to journalArticle

Design and characterization of a consensus hemagglutinin vaccine immunogen against H3 influenza A viruses of swine

Sun, H., Sur, J. H., Sillman, S., Steffen, D. & Vu, H. L. X., Dec 2019, In : Veterinary Microbiology. 239, 108451.

Research output: Contribution to journalArticle

Open Access

Detection of atypical porcine pestivirus genome in newborn piglets affected by congenital tremor and high preweaning mortality

Sutton, K. M., Lahmers, K. K., Harris, S. P., Wijesena, H. R., Mote, B. E., Kachman, S. D., Borza, T. & Ciobanu, D. C., Oct 3 2019, In : Journal of animal science. 97, 10, p. 4093-4100 8 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Diet modulates cecum bacterial diversity and physiological phenotypes across the BXD mouse genetic reference population

Perez-Munoz, M. E., McKnite, A. M., Williams, E. G., Auwerx, J., Williams, R. W., Peterson, D. A. & Ciobanu, D. C., Jan 1 2019, In : PloS one. 14, 10, e0224100.

Research output: Contribution to journalArticle

Open Access

Effect of environmental temperature and β-adrenergic agonist supplementation on rumen volatile fatty acid production in sheep

Duffy, E. M., Wilson, H. C., Schmidt, T. B., Yates, D. T. & Petersen, J. L., Dec 16 2019, In : Translational Animal Science. 3, p. 1744-1748 5 p.

Research output: Contribution to journalArticle

Open Access

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition (Communications biology (2018) 1 (197))

Kalbfleisch, T. S., Rice, E. S., DePriest, M. S., Walenz, B. P., Hestand, M. S., Vermeesch, J. R., O'Connell, B. L., Fiddes, I. T., Vershinina, A. O., Saremi, N. F., Petersen, J. L., Finno, C. J., Bellone, R. R., McCue, M. E., Brooks, S. A., Bailey, E., Orlando, L., Green, R. E., Miller, D. C., Antczak, D. F. & 1 others, MacLeod, J. N., Sep 11 2019, In : Communications biology. 2, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Evaluation of genotype quality parameters for SowPro90, a new genotyping array for swine1

Wijesena, H. R., Rohrer, G. A., Nonneman, D. J., Keel, B. N., Petersen, J. L., Kachman, S. D. & Ciobanu, D. C., Jul 30 2019, In : Journal of animal science. 97, 8, p. 3262-3273 12 p.

Research output: Contribution to journalArticle

Open Access

Evidence for a de novo, dominant germ-line mutation causative of osteogenesis imperfecta in two Red Angus calves

Petersen, J. L., Tietze, S. M., Burrack, R. M. & Steffen, D. J., Apr 1 2019, In : Mammalian Genome. 30, 3-4, p. 81-87 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genetic diversity and relationships among native Japanese horse breeds, the Japanese Thoroughbred and horses outside of Japan using genome-wide SNP data

Tozaki, T., Kikuchi, M., Kakoi, H., Hirota, K., Nagata, S., Yamashita, D., Ohnuma, T., Takasu, M., Kobayashi, I., Hobo, S., Manglai, D. & Petersen, J. L., Oct 1 2019, In : Animal genetics. 50, 5, p. 449-459 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genome to phenome: Improving animal health, production, and well-being - A new USDA blueprint for animal genome research 2018-2027

Agricultural Animal Genomics Community, Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 327.

Research output: Contribution to journalReview article

Open Access
6 Scopus citations

Genome-wide association analysis for porcine reproductive and respiratory syndrome virus susceptibility traits in two genetic populations of pigs

Walker, L. R., Jobman, E. E., Sutton, K. M., Wittler, JN., Johnson, R. K. & Ciobanu, D. C., Aug 1 2019, In : Journal of animal science. 97, 8, p. 3253-3261 9 p.

Research output: Contribution to journalArticle

Open Access

Genomic Bayesian confirmatory factor analysis and Bayesian network to characterize a wide spectrum of rice phenotypes

Yu, H., Campbell, M. T., Zhang, Q., Walia, H. & Morota, G., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 6, p. 1975-1986 12 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
Open Access

Increasing the concentration of linolenic acid in diets fed to Jersey cows in late lactation does not affect methane production

Judy, J. V., Bachman, G. C., Brown-Brandl, T. M., Fernando, S. C., Hales, K. E., Harvatine, K. J., Miller, P. S. & Kononoff, P. J., Mar 2019, In : Journal of Dairy Science. 102, 3, p. 2085-2093 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

Intermittent maternofetal O2 supplementation during late gestation rescues placental insufficiency-induced intrauterine growth restriction and metabolic pathologies in the neonatal lamb

Cadaret, C. N., Posont, R. J., Swanson, R. M., Beard, J. K., Barnes, T. L., Beede, K. A., Petersen, J. L. & Yates, D. T., Dec 16 2019, In : Translational Animal Science. 3, p. 1696-1700 5 p.

Research output: Contribution to journalArticle

Open Access

Leveraging breeding values obtained from random regression models for genetic inference of longitudinal traits

Campbell, M., Momen, M., Walia, H. & Morota, G., Jun 2019, In : Plant Genome. 12, 2, 180075.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Livestock animals to study infertility in women

Abedal-Majed, M. A. & Cupp, A. S., Jan 1 2019, In : Animal Frontiers. 9, 3, p. 28-33 6 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Maternal age influences the number of primordial follicles in the ovaries of yearling Angus heifers

Tenley, S. C., Gomes, R. S., Rosasco, S. L., Northrop, E. J., Rich, J. J. J., McNeel, A. K., Summers, A. F., Miles, J. R., Chase, C. C., Lents, C. A., Perry, G. A., Wood, J. R., Cupp, A. S. & Cushman, R. A., Jan 2019, In : Animal Reproduction Science. 200, p. 105-112 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Maternal inflammation at 0.7 gestation in ewes leads to intrauterine growth restriction and impaired glucose metabolism in offspring at 30 d of age

Posont, R. J., Cadaret, C. N., Beede, K. A., Beard, J. K., Swanson, R. M., Gibbs, R. L., Petersen, J. L. & Yates, D. T., Dec 16 2019, In : Translational Animal Science. 3, p. 1673-1677 5 p.

Research output: Contribution to journalArticle

Open Access

Maternal inflammation at midgestation impairs subsequent fetal myoblast function and skeletal muscle growth in rats, resulting in intrauterine growth restriction at term

Cadaret, C. N., Posont, R. J., Beede, K. A., Riley, H. E., Loy, J. D. & Yates, D. T., Feb 26 2019, In : Translational Animal Science. 3, 2, p. 867-876 10 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
Open Access
2 Scopus citations

Microscale serum extraction method for the simultaneous analysis of corticosterone and lipids

Rister, A. L., Bidne, K. L., Wood, J. R. & Dodds, E. D., Dec 7 2019, In : Analytical Methods. 11, 45, p. 5746-5749 4 p.

Research output: Contribution to journalArticle

Obesity induces ovarian inflammation and reduces oocyte quality

Snider, A. P. & Wood, J. R., Jan 1 2019, In : Reproduction. 158, 3, p. R79-R90

Research output: Contribution to journalReview article

Open Access
10 Scopus citations

Perturbations in Lineage Specification of Granulosa and Theca Cells May Alter Corpus Luteum Formation and Function

Abedel-Majed, M. A., Romereim, S. M., Davis, J. S. & Cupp, A. S., Nov 29 2019, In : Frontiers in Endocrinology. 10, 832.

Research output: Contribution to journalReview article

Open Access

Postnatal Nutrient Repartitioning due to Adaptive Developmental Programming

Posont, R. J. & Yates, D. T., Jul 2019, In : Veterinary Clinics of North America - Food Animal Practice. 35, 2, p. 277-288 12 p.

Research output: Contribution to journalReview article

1 Scopus citations

Postnatal β2 adrenergic treatment improves insulin sensitivity in lambs with IUGR but not persistent defects in pancreatic islets or skeletal muscle

Yates, D. T., Camacho, L. E., Kelly, A. C., Steyn, L. V., Davis, M. A., Antolic, A. T., Anderson, M. J., Goyal, R., Allen, R. E., Papas, K. K., Hay, W. W. & Limesand, S. W., Dec 1 2019, In : Journal of Physiology. 597, 24, p. 5835-5858 24 p.

Research output: Contribution to journalArticle

Open Access

Predicting longitudinal traits derived from high-throughput phenomics in contrasting environments using genomic Legendre polynomials and B-splines

Momen, M., Campbell, M. T., Walia, H. & Morota, G., Oct 1 2019, In : G3: Genes, Genomes, Genetics. 9, 10, p. 3369-3380 12 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Preliminary heritability of complete rotation large colon volvulus in Thoroughbred broodmares

Petersen, J. L., Lewis, R. M., Embertson, R., Valberg, S. J. & Holcombe, S. J., Jan 1 2019, In : Veterinary Record. 185, 9

Research output: Contribution to journalArticle

Ractopamine HCl improved cardiac hypertrophy but not poor growth, metabolic inefficiency, or greater white blood cells associated with heat stress in concentrate-fed lambs

Swanson, R. M., Beede, K. A., Freeman, M. D., Eggleston, M. L., Schmidt, T. B., Petersen, J. L. & Yates, D. T., Dec 16 2019, In : Translational Animal Science. 3, p. 1786-1791 6 p.

Research output: Contribution to journalArticle

Open Access

Real supermodels wear wool: Summarizing the impact of the pregnant sheep as an animal model for adaptive fetal programming

Beede, K. A., Limesand, S. W., Petersen, J. L. & Yates, D. T., Jan 1 2019, In : Animal Frontiers. 9, 3, p. 34-43 10 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Reducing methane production with corn oil and calcium sulfate: Responses on whole-animal energy and nitrogen balance in dairy cattle

Judy, J. V., Bachman, G. C., Brown-Brandl, T. M., Fernando, S. C., Hales, K. E., Miller, P. S., Stowell, R. R. & Kononoff, P. J., Mar 2019, In : Journal of Dairy Science. 102, 3, p. 2054-2067 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Relationship between the cervical microbiome, HIV Status, and precancerous lesions

Klein, C., Gonzalez, D., Samwel, K., Kahesa, C., Mwaiselage, J., Aluthge, N., Fernando, S., West, J. T., Wood, C. & Angeletti, P. C., Jan 1 2019, In : mBio. 10, 1, e02785-18.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Sustained maternal inflammation during the early third-trimester yields intrauterine growth restriction, impaired skeletal muscle glucose metabolism, and diminished β-cell function in fetal sheep

Cadaret, C. N., Merrick, E. M., Barnes, T. L., Beede, K. A., Posont, R. J., Petersen, J. L. & Yates, D. T., Dec 1 2019, In : Journal of animal science. 97, 12, p. 4822-4833 12 p.

Research output: Contribution to journalArticle

Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era

Raudsepp, T., Finno, C. J., Bellone, R. R. & Petersen, J. L., Dec 1 2019, In : Animal genetics. 50, 6, p. 569-597 29 p.

Research output: Contribution to journalReview article

Open Access
3 Scopus citations

Utilizing trait networks and structural equation models as tools to interpret multi-trait genome-wide association studies

Momen, M., Campbell, M. T., Walia, H. & Morota, G., Sep 18 2019, In : Plant Methods. 15, 1, 107.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Yes-associated protein 1 is required for proliferation and function of bovine granulosa cells in vitro

Plewes, M. R., Hou, X., Zhang, P., Liang, A., Hua, G., Wood, J. R., Cupp, A. S., Lv, X., Wang, C. & Davis, J. S., Nov 21 2019, In : Biology of reproduction. 101, 5, p. 1001-1017 17 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations